From: Bioprospecting metagenomes: glycosyl hydrolases for converting biomass
Metagenome sourcea | Glycosyl hydrolase matchesb | Most abundant glycosyl hydrolase familyc |
---|---|---|
Marine archaeal anaerobic methane oxidation community (methane oxidation, sulfate reducer) [62] | 3 | GH16 (33%), GH2 (33%), GH38 (33%) |
Acid mine drainage (acidic, metal tolerance, pink biofilm) [12] | 73 | GH13 (26%), GH15 (21%), GH57 (12%), GH28 (9%), GH18 (7%) |
Human gut community (gut microbiome of human) [63] | 705 | GH13 (20%), GH3 (11%), GH2 (9%), GH1 (7%), GH31 (5%) |
Hypersaline mat (marine microbial communities) [64] | 786 | GH13 (24%), GH2 (9%), GH3 (7%), GH65 (4%), GH57 (4%) |
Lake Washington formaldehyde enrichment (13C-labeled formaldehyde; 13C-labeled DNA isolated by CsCl purification) [21] | 397 | GH13 (15%), GH23 (9%), GH3 (8%), GH2 (8%), GH94 (8%) |
Lake Washington formate enrichment (13C-labeled formate; 13C-labeled DNA isolated by CsCl purification) [21] | 114 | GH13 (28%), GH23 (10%), GH2 (7%), GH94 (6%), GH28 (4%), GH8 (4%) |
Lake Washington methane enrichment (13C-labeled methane; 13C-labeled DNA isolated by CsCl purification) [21] | 428 | GH13 (17%), GH94 (10%), GH23 (8%), GH3 (8%), GH57 (5%) |
Lake Washington methanol enrichment (13C-labeled methanol; 13C-labeled DNA isolated by CsCl purification) [21] | 373 | GH13 (16%), GH23 (9%), GH3 (8%), GH94 (8%), GH2 (5%) |
Lake Washington methylamine enrichment (13C-labeled methylamine; 13C-labeled DNA isolated by CsCl purification) [21] | 285 | GH23 (20%), GH13 (13%), GH57 (8%), GH17 (7%), GH3 (6%) |
Mouse gut community (lean mouse) [65] | 119 | GH3 (10%), GH43 (9%), GH94 (9%), GH2 (8%), GH13 (8%) |
Mouse gut community (obese mouse) [65] | 58 | GH68 (12%), GH13 (10%), GH43 (10%), GH94 (10%), GH2 (10%), GH3 (10%) |
Olavius algarvensis microbiome delta (sulfate reducer, symbiont) [66] | 41 | GH23 (41%), GH13 (12%), GH57 (7%), GH2 (5%), GH3 (5%), GH5 (5%), GH28 (5%), GH43 (5%) |
Olavius algarvensis microbiome gamma (sulfate reducer, symbiont) [66] | 16 | GH23 (31%), GH13 (19%), GH2 (6%), GH3 (6%), GH28 (6%), GH31 (6%), GH57 (6%), GH73 (6%), GH77 (6%), GH103 (6%) |
Singapore air sample [67] | 514 | GH13 (13%), GH3 (9%), GH23 (9%), GH15 (8%), GH28 (5%) |
Sludge Australian Phrap assembly (phosphate removal) [68] | 177 | GH13 (28%), GH23 (15%), GH16 (8%), GH103 (7%), GH3 (7%) |
Sludge US Jazz assembly (phosphate removal) [68] | 126 | GH13 (20%), GH23 (12%), GH3 (9%), GH16 (7%), GH2 (6%) |
Sludge US Phrap assembly (phosphate removal) [68] | 260 | GH13 (17%), GH23 (13%), GH3 (8%), GH16 (7%), GH94 (7%) |
Soil diversa silage (farm silage surface soil) [69] | 1,078 | GH13 (22%), GH3 (9%), GH94 (8%), GH43 (5%), GH15 (5%), GH2 (5%) |
TM7 (human oral microflora) [70] | 14 | GH13 (29%), GH1 (21%), GH57 (21%), GH4 (7%), GH25 (7%), GH 28 (7%), GH73 (7%) |
Termite gut (cellulolytic cellulose degrader, lignin degrader, symbiont) [55] | 1,267 | GH13 (12%), GH94 (12%), GH5 (9%), GH3 (8%), GH2 (6%) |
Uranium-contaminated groundwater (acidophile) | 71 | GH23 (18%), GH13 (10%), GH94 (7%), GH17 (6%), GH28 (6%), GH3 (6%) |
433 | GH23 (17%), GH13 (13%), GH3 (12%), GH2 (6%), GH103 (5%) |