Transcriptome analyses | W5 cDNA |
---|---|
Roche 454 GS FLX | Â |
Run cycles Total number of reads Total read length, Mb | 1 526,516 111 |
   Average read length, bp | 210.2 |
Illumina GA II Paired-End | Â |
   Read length, bp | 40 + 40 |
   Run lanes | 1 |
Total number of reads Total read length, Mb | 14,802,234 1,184 |
   GC content | 37.1% |
Contig assembly | Â |
   Contig numbers | 20,232 |
   Total contig lengths, Mb | 9.0 |
   Average contig length, bp | 447.2 |
   Largest contig length, bp | 4,397 |
Gene prediction, length > 500 bp | Â |
   Number of ORFs | 2,284 |
   Number of domains predicted in ORFs | 9,720 |
   Average ORF length, bp | 846.9 |
   Maximum RPKMb value | 31,647.2 |
   Number of GH-like contigs | 219 |