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Table 2 Domain-level primers used to amplify short-subunit rDNA genes from DNA extracts of biomass compost

From: Tracking dynamics of plant biomass composting by changes in substrate structure, microbial community, and enzyme activity

 

Genes

Primer sequences & reference

Amplicon size(bp)

Archaea

16 s rDNA

F: TTCCGGTTGATCCYGCCRG

R: YCCGGCGTTGAMTCCAATT

Ref: [22]

937

Bacteria

16 s rDNA

F: TCCTACGGGAGGCAGCAGT

R: GGACTACCAGGGTATCTAATCCTGTT

Ref: [25]

466

Fungi

5.8 s and ITS2 rDNA

F: GCATCGATGAAGAACGCAGC

R: TCCTCCGCTTATTGATATGC

Ref: [22, 26]

400