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Table 3 QTLs for growth traits, seed characters

From: An approach for jatropha improvement using pleiotropic QTLs regulating plant growth and seed yield

 

Trait

QTLa

Linkage Group

Marker

PositionbcM

LOD Peak

R2 c (%)

Additive Effectsd

Growth

H4m

qH4m-3

3

Jcuint179

55.8

3.50

5

−17.51

qH4m-7

7

Jatr610

71.9

2.97

4.4

−10.31

H10m

qH10m-3

3

Jatr1054

11.9

3.55

6.3

21.53

qH10m-5

5

Jatr945

42.1

5.81

8.5

21.99

qH10m-6

6

Jcuint312

25.3

2.56

4

−15.80

qH10m-9

9

Jatr859

5.0

3.09

4.5

16.30

qH10m-10

10

Jcuint081

20.6

4.63

6.7

−19.25

D4m

qD4m-5

5

OleI

31.3

3.88

5.6

0.26

qD4m-9

9

Jatr698

24.6

2.70

5.2

0.25

qD4m-11

11

Jatr684

14.3

2.98

4.6

0.25

D10m

qD10m-3a

3

Jatr1054

11.9

8.11

12.7

0.96

qD10m-3b

3

Jcuint048

59.9

3.85

4.9

−0.68

qD10m-5

5

Jatr746

38.3

15.03

21.1

1.11

BN4m

qBN4m-6

6

Jcuint036

64.3

4.04

6.9

−1.26

BN10m

qBN10m-1

1

Jatr722

54.1

3.44

5.6

2.04

qBN10m-4

4

Jatr854

41.0

3.51

5.5

−2.19

qBN10m-6

6

Jcuint111

93.4

3.58

5.9

−2.28

TBN

qTBN-7

7

Jatr610

68.9

3.40

8.4

1.30

BNPB

qBNPB-5

5

Jatr739

46.2

2.98

7.9

0.62

Flower, Fruit and seed yield

FFN

qFFN-2

2

Jatr691

20.7

2.00

4.5

1.20

  

qFFN-5

5

OleI

30.3

3.38

7

1.56

  

qFFN-6

6

Jatr301

15.8

6.41

13.6

−2.21

  

qFFN-7

7

Jcuint151

2.0

4.16

9.6

1.97

 

FruitNo

qFruitNo-1

1

Jatr749

42.4

2.47

5.5

5.54

  

qFruitNo-6

6

Jatr839

28.3

4.97

12.4

−7.61

  

qFruitNo-7

7

Jatr866

64.8

3.15

7.3

5.65

 

TSW

qTSW-5

5

Jcuint002

33.7

2.24

5.2

29.33

  

qTSW-7

7

Jatr866

66.8

2.70

4.9

26.31

  1. a QTL: starting with “q,” followed by an abbreviation of the trait name, the name of the linkage group, and the number of QTL affecting the trait on the linkage group. b Position from the first marker on each linkage group. c Coefficient of determination or the percentage of variance explained (PVE) by the detected QTL. d Estimated phenotypic effect of substituting J. integerrima alleles with J. curcas alleles at QTL.