From: Expression of fatty acid and lipid biosynthetic genes in developing endosperm of Jatropha curcas
Gene | Category1 | Forward primer (5’–3’) | Reverse primer (5’–3’) | Accession no. |
---|---|---|---|---|
Ketoacyl ACP synthase I (KAS I) | I | TGGTTGGTCTTCTTTCCCTC | ACAAACCCACCAGCTTCATAG | JQ806261 |
Ketoacyl ACP synthase II (KAS II) | I | ACAGTCACCTTGTTTTTGTTCC | ATGCTAATTTACCCTGATAAGG | JQ806262 |
Ketoacyl ACP synthase III (KAS III) | I | CAATTATTAGATGGGGCTGAAG | TATGTGACAACAGAAACCAAGC | JQ806263 |
3-ketoacyl-CoA reductase isoform 1 (KCR1) | I | TCCTTTATTTGGGGTTTGTTAC | AGCAACCTAAAAGTTCAATTCC | JQ806264 |
3-ketoacyl-CoA reductase isoform 3 (KCR3) | I | ATGGACAGTAACATAGCCAATC | TCCACACACTTTTTCACAACTG | JQ806266 |
Acyl carrier protein1 (ACP1) | I | ACCGTTCAGGAAGCTGCTG | ACATAGTTCACAACAAGATTGC | JQ806272 |
Acyl-CoA dehydrogenase (ACD) | I | AATTGCAGATGGCCCCGATG | AGTTTTTGTGTGCTGGTATTGG | JQ806273 |
Semialdehyde decarboxylase 1 (SAD1) | I | GGGGCAGTGATTTTCCATTTG | GTGCTTTTTCCATATCTAATGAC | JQ806274 |
Hydroxyacyl-ACP dehydratase (HAD) | I | CTGCTATCCTATGCCTTTTTTG | GTTTTGCCCATAAGTTTAACATC | JQ806275 |
Acyl-ACP thioesterase (FATA) | I | TATTTGTGTGGGCATCTGCC | TAGTTGGTAAGGTGGGTTTAAC | JQ806276 |
Enoyl-ACP reductase (EAR) | I | ATGGGTGTGGGAGTTGACAG | GTGACATGGCATGGATTAAATG | JQ806277 |
Phosphatidic acid phosphatase β (β-PAP) | I | CACGAGCCCCATTCTGGAC | AGTCTGTTCAAGGTCAGGGG | JQ806281 |
CDP-diacylglycerol synthase (CDP-DAG) | I | CTAATAACAGTGTCATGGCAG | TTCCATATTCACTAAGTGCATTG | JQ806282 |
Digalactosyldiacylglycerol synthase 1 (DGD1) | I | AGACCTGCATCTCTACCTCC | GGTGCTGCCTAAATCTATATTC | JQ806283 |
Monogalactosyldiacylglycerol synthase (MGD2) | I | GTGTAAAGAATGGCAAGCATG | CCCCTAAAAGAATCAGAAACC | JQ806284 |
Phosphatidylinositol synthase (PTS) | I | CTTTTCATCTTCTGTGTCCATG | TAGTCAATAACCATCTCGTGC | JQ806287 |
Short-chain acyl-CoA oxidase (SCAOX) | I | AGGTTCTGCTTTTGCGCTAC | GGTCCCCTAGCTGGTAATTC | JQ806289 |
Long-chain acyl-CoA oxidase (LCAOX) | I | TGCACCAAGAGTATGATAGGC | TTACGTTTCTTTGTTCCAGCC | JQ806290 |
Acyl-CoA oxidase (AOX) | I | CCGTAATGCAAGACTGTGAAG | TTGCCATTAACTTGGATACAGC | JQ806291 |
Long-chain acyl-CoA synthetase (LACS) | I | CAAGAGAGAGGCCATCAGG | AAAATCCAAGAGAAACAGCAAG | JQ806292 |
Oleosin 3 (Oleosin 3) | I | AAGAGAAGTGGGTTTTGGTGG | AGAAACAAAAAGATTTAAGCG | JQ806304 |
Diacylglycerol kinase (DGK) | I | GTGGCTCAGATTTGGGTTGC | AAACTATTGAAGCTAAGCCTGG | JQ806306 |
D-erythro-sphingosine kinase/diacylglycerol kinase (DeDGK) | I | ATCAAATTCAGGAAAAGTAGCG | AATCAAACTGCACAAAAGGAAC | JQ806308 |
Calmodulin-binding diacylglycerol kinase (cDGK) | I | AGAAGATAAGGAAGAGCGAAG | GTTATAGCCTACAGCCAAAGC | JQ806309 |
Protein phosphatase 2C (PP2C) | I | TCATGGGCTTAAATGTGTGTAC | AACTCATACTTGAAAAGCTAAGG | JQ806311 |
Tyrosine phosphatase (TP) | I | TGGCCGTTTGTTAAG ATTGATC | ATTGACTTCATAATGTTGACCC | JQ806312 |
Phosphoglycolate phosphatase (PGP) | I | ATGCTGATGGGCTTTACTTTG | AGAACTAGCAAACTCCTTCCC | JQ806314 |
Lysophosphatidyl acyltransferase 1(LPAT1) | I | CTGAAGGTTAGTGCAACAAATG | GTAACATCGTCTGGAAAATTGC | JQ806317 |
Lysophosphatidyl acyltransferase 2 (LPAT2) | I | CTTTGGTTTCATGTGCTGCAC | ATACATGAAAAGAAAAGGTGCC | JQ806320 |
Lysophosphatidyl acyltransferase 5 (LPAT5) | I | TTTGGCATCTGCAACCTATTTC | GCCATAAACAGGTATGAGTCTC | JQ806319 |
Diacylglycerol acyltransferase (DGAT1) | I | GACCTAATGAATCGGAAAGGC | CCGCATAGCCAAAATTGCTTG | JQ806316 |
Phospholipid/glycerol acyltransferase (PL/GA) | I | TAAAGTATTCTCGCCCTAGCCC | ACATTTGCTTCTGTTTTCATGC | JQ806322 |
Triacylglycerol lipase (TAGL) | I | GTGAATACTGTTGTAAGCCTG | GTCCAAAAACACCAATGAAATG | JQ806324 |
Phospholipase C (PLC) | I | CAGCTCAATGGTGATTATGTC | AGCTTTTATGTAATTTGCGTCG | JQ806325 |
Phospholipase D (PLD) | I | ACTATGGGCAGAGCATGTTG | TCACATCCAGGAATAGCCTC | JQ806326 |
Phospholipase D α (PLDα) | I | CGCCAAATCTGATTACCTCC | CACTGATATGAACATCCTGGC | JQ806327 |
Phosphatidylinositol 4-kinase (P4K) | I | AAGACTTCTAGGGTTTGTGGG | CTCCTCAGTCCTCACTTAGC | JQ806329 |
Putative phosphatase (PP) | I | TGGGAAGATGCCATGTCTATC | CCAAACAAGAGATAAACTAACAG | JQ806330 |
Fatty acid desaturase (FAD) | I | ATGACCAATCCTGTTCCAAAG | TGCTAATGTTTACAAATGAGGG | JQ806294 |
Fatty acid desaturase 5 (FAD5) | I | ACTTGGTATGTTGTGAGGTTTC | ATGTAGAAAAGCTAATGCCCC | JQ806295 |
Fatty acid desaturase 6 (FAD6) | I | TTGCCCCTGAAGAATCTCAAC | ATTCATATTACTGTCCTCCCC | JQ806296 |
Acyl-ACP desaturase (AAD) | I | AGTTTTTGATCGGACGGTGG | AAAGAGAAGAAAGCAAGACTCG | JQ806300 |
δ-12-acyl-lipid desaturase (DALD) | I | GCTATAATATGTGGTTTGGCC | GTTGTAGAGTTCCATAAACGG | JQ806301 |
δ-7-C-5 sterol desaturase (D7SD) | I | TCTTGCATAGGCATCCATTTC | AGATCGAGTACATGGCTATGG | JQ806302 |
δ-9-stearoyl-acyl carrier protein desaturase (D9SD) | I | TGTTTGGAGAAGACATACCGG | CAGGGCTGTGGTGACTTAC | JQ806303 |
δ-12 fatty acid conjugase (D12FAC) | I | AGCCAGAAGAGGGAGGTCC | AACTCAAACACCACTTTCCCG | JQ806298 |
Fatty acid desaturase 2 (FAD2) | I | TGGACTACTTGTTAGGAATTTG | GTTCATATTGTTTCTACCTGGG | JQ806297 |
Sterol desaturase (SD) | II | CTGATGAAGGCACACTGTTG | GTAGAAACATAATCCACTGCC | JQ806299 |
3-ketoacyl-CoA reductase isoform 2 (KCR2) | II | CGTCTCTCTCTCGGAATCC | TCTTCTGTGAAAACGACCCTC | JQ806265 |
Enoyl-CoA hydratase (ECH) | II | AGATTGGAGGAATGGTCAAAG | TATTGCTTGCTAGGATTGGAG | JQ806267 |
Oleosin (Oleosin) | II | TGGACAGTATATGCAACACAAG | TATTCCACACTGAAATTAGCAC | JQ806305 |
Long-chain acyl-CoA synthetase 8 (LACS8) | II | TTTGTTTAATGTGCTTTCCTCC | GTCCTGCAATTTAGGTGAAGC | JQ806293 |
Diacylglycerol kinase 1 (DGK1) | II | TGGCACTTAGGCTGACTTAG | CAGCTAAAAGCACCAAGTTAAG | JQ806307 |
Lysophosphatidyl acyltransferase 4 (LPAT4) | II | ATTTTAGCATGTGCATTCCTTG | TATAAACAAGTTCACAAAAAGGTC | JQ806318 |
Lipase (Lipase) | II | TGGGGTTCAATGCCAAAGAC | TAGCCTGTCTACAGATTTTCC | JQ806323 |
Ketoacyl-CoA synthase (KCS) | III | CTTTGATTTGTACTTTCATGGG | AACACACAAGCATTTGAAGCC | JQ806268 |
Choline kinase (CLK) | III | TATTTCTTCCTGCGATACAATG | TTTGGATCTTAAATCTGGCTAC | JQ806313 |
Protein phosphatase 2A (PP2A) | IV | TGATGTTACCCGTAGAACTCC | ATAAAAAAAAACAAAACCTGCCC | JQ806310 |
Ketoacyl ACP reductase (KAR) | IV | CGGAAGAGGTTGCAGGATTG | AAAAACTGCCTCAACACAAGC | JQ806278 |
Phosphatidic acid phosphatase α (α-PAP) | IV | ATGGGGCTATATTTGGCTCAC | CTTGGAAACCTGATAAACAAAAG | JQ806280 |
Cholinephosphate cytidylyltransferase (CPC) | IV | GACAAAGATGATGCTAAGGAG | TATTCCTATCCTCACAACAAGC | JQ806285 |
Cyclopropane-fatty-acyl-phospholipid synthase (CFAS) | IV | GACTTGTCTTCCTGAGAGCC | GCAGTTCTTTGAAAGCGATGG | JQ806286 |
Sulfoquinovosyldiacylglycerol synthase type 2 (SQD2) | IV | GCAGCCACTAGAAAAATCCG | GCAGAGCAAATCCGTCACC | JQ806288 |
Phosphotyrosine protein phosphatase (PPP) | IV | ATGTGCTCCTTTTGTAAGAAAC | AACTTTGAATGCCGCTGGTC | JQ806315 |
Glycerol-3-phosphate acyltransferase (G3PAT) | IV | GGCAGTAATGTCTTTGGTTTC | TACATGAAAAGAAAGGGTGCC | JQ806321 |
Phosphatidylinositol 3-kinase (P3K) | IV | TGGAGTTTGCTCAAGGAGTC | TTAAAAAAGAGCTGAAAGACACC | JQ806328 |
Malonyl CoA ACP transacylase (MCAT) | V | GTTATTGCTGGCATTGTCAAG | GAAATCTCTAGTACATGACGC | JQ806279 |
Lipid phosphate phosphatase 3 (LPP3) | V | TCTGAGACGAGCGGAGGAC | ATTCATCATCTCCTTCCAGTTC | JQ806270 |
Jatropha Actin 1 protein (Actin1) | Control | TAATGGTCCCTCTGGATGTG | AGAAAAGAAAAGAAAAAAGCAGC | JQ806331 |