Proteomic analysis reveals resistance mechanism against biofuel hexane in Synechocystis sp. PCC 6803

Liu, Jie; Chen, Lei; Wang, Jiangxin; Qiao, Jianjun; Zhang, Weiwen

doi:10.1186/1754-6834-5-68

Biotechnology for Biofuels and Bioproducts

Table 2 Down-regulated proteins by hexane ,,

From: Proteomic analysis reveals resistance mechanism against biofuel hexane in Synechocystis sp. PCC 6803

Protein ID	24 h				48 h				Description
	Hexane-24h-r1 vs Control-24h-r1	Hexane-24h-r2 vs Control-24h-r1	Hexane-24h-r1 vs Control-24h-r2	Hexane-24h-r2 vs Control-24h-r2	Hexane-48h-r1 vs Control-48h-r1	Hexane-48h-r2 vs Control-48h-r1	Hexane-48h-r1 vs Control-48h-r2	Hexane-48h-r2 vs Control-48h-r2
Sll1605					0.60				(3R)-hydroxymyristoyl-ACP dehydratase
Sll1101							0.59	0.58	30S ribosomal protein S10
Sll1816	0.60	0.37	0.64	0.49					30S ribosomal protein S13
Slr0628			0.38	0.35					30S ribosomal protein S14
Ssr0482	0.52	0.48		0.66					30S ribosomal protein S16
Ssl3437	0.49		0.63						30S ribosomal protein S17
Ssr1399		0.52							30S ribosomal protein S18
Sll1804		0.61		0.54					30S ribosomal protein S3
Slr0469	0.47	0.41	0.59	0.47					30S ribosomal protein S4
Sll1812		0.62							30S ribosomal protein S5
Sll1097	0.54								30S ribosomal protein S7
Sll1809	0.57	0.48	0.48	0.45					30S ribosomal protein S8
Sll1822	0.47	0.32	0.63	0.48					30S ribosomal protein S9
Slr1140					0.65	0.65			3-amino-5-hydroxybenzoic acid synthase
Sll1821	0.42	0.35	0.57	0.48			0.65		50S ribosomal protein L13
Sll1813	0.53	0.41	0.64	0.55					50S ribosomal protein L15
Sll1819	0.45	0.32	0.46	0.32	0.64				50S ribosomal protein L17
Sll1811		0.59							50S ribosomal protein L18
Sll1802		0.59							50S ribosomal protein L2
Srl1678			0.67	0.61					50S ribosomal protein L21
Sll1803	0.53	0.64	0.52	0.65					50S ribosomal protein L22
Sll1807		0.48							50S ribosomal protein L24
Ssr2799	0.00		0.58						50S ribosomal protein L27
Ssr1604	0.50	0.37	0.55						50S ribosomal protein L28
Sll1810		0.35		0.43	0.57				50S ribosomal protein L6
Sll1927				0.63					ABC transporter
Slr1694		0.63							Activat or photopigment and puc expression
Slr0083			0.55	0.39					ATP-dependent RNA helicase DeaD
Sll0834							0.42		Bicarbonate transporter
Sll1223		0.60							Bidirectional hydrogenase complex protein HoxU
Slr1839			0.66	0.58					Carbon dioxide concentrating mechanism protein CcmK
Sll1292								0.62	CheY family protein
Slr1641			0.64						ClpB protein
Sll1258					0.58				Deoxycytidine triphospahate deaminase
Sll1327			0.57	0.51					F0F1 ATP synthase subunit gamma
Sll0513						0.65			Franesyl-diphospahate farnesyltrasferas
Ssl0020							0.59		Ferredoxin
Sll0567					0.65				Ferric uptake regulation protein
Sll0248	0.00	0.00							Flavodoxin FldA
Sll1370					0.62				GDP-mannose pyrophosphorylase
Sll0207								0.59	Glucose-l-phosphate thymidylyltransferase
Slr0288					0.66	0.64			Glutamate--ammonia ligase
Sll1019	0.57	0.63							Glyoxalase II
Slr1123	0.62								Guanylate kinase
Sll0764					0.66				High-affinity branched- chain amino acid transport
Slr2099							0.57		Hybrid sensory kinase
Slr0546					0.61				indole-3-glycerol-phosphate synthase
Sll1214							0.66	0.63	Magnesium-protoprphyrin IX monomethyl ester cyclase
Sll0223								0.63	NAD(P)H-quinone oxidoreductase subunit 2
Slr0844								0.64	NAD(P)H-quinone oxidoreductase subunit F
Slr077			0.55						NifS protein
Slr2005				0.61					Periplasmic protein, function unknown
Sll0064					0.65				Putative polar amino acid transport system
Slr1410		0.61							Periplasmic WD-repeat protein
Slr1615		0.57							Perosamine synthetase
Sll0226	0.51		0.56						Photosystem I assembly protein Ycf4
Slr1894				0.60					Probable DNA-binding stress protein
Sll0772					0.57	0.57			Probable porin; major outer membrane protein
Slr1861				0.59					Probable sigma regulatory factor
Slr0677						0.64			Putative biopolymer transport protein exbB-like 2
Slr1531				0.66					Signal recognition particle protein
Slr1139							0.63	0.66	Thioredoxin
Sll0615								0.61	Transmembrane protein FT 27
Sll0518, Sll0596, Sll0783, Sll0872, Sll1118, Sll1304, Slr0007, Slr0147, Slr0168, Slr0723, Slr1260, Slr1363, Slr1385, Ssr2254									Hypothetical proteins

*Proteins with 1.5 fold change and p- value less than 0.05.
**Hypothetical proteins listed with gene ID only, full information in Additional file 1: Table S1.
***Blank representsthat ratio can’t be claculated for the condition.

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