Table 2 Top 50 expressed genes based on normalized expression level (RPKM values)
Gene ID | Control-24h | Control-48h | Control-72h | Ethanol-24h-r1 | Ethanol-24h-r2 | Ethanol-48h-r1 | Ethanol-48h-r2 | Ethanol-72h-r1 | Ethanol-72h-r2 | Discription | Cellular role |
|---|---|---|---|---|---|---|---|---|---|---|---|
sll1744 | 7.42E+05 | 8.96E+05 | 9.57E+05 | 6.14E+05 | 6.66E+05 | 6.65E+05 | 3.97E+05 | 7.24E+05 | 6.49E+05 | 50S ribosomal protein L1 | Protein synthesis |
sll1745 | 3.42E+06 | 3.74E+06 | 3.97E+06 | 2.80E+06 | 3.01E+06 | 2.74E+06 | 1.82E+06 | 2.90E+06 | 2.54E+06 | 50S ribosomal protein L10 | Protein synthesis |
sll1743 | 3.56E+05 | 5.73E+05 | 6.30E+05 | 3.00E+05 | 3.86E+05 | 4.17E+05 | 2.23E+05 | 4.90E+05 | 4.11E+05 | 50S ribosomal protein L11 | Protein synthesis |
sll1746 | 6.76E+05 | 5.38E+05 | 7.26E+05 | 1.66E+05 | 2.49E+05 | 2.90E+05 | 1.78E+05 | 2.78E+05 | 2.58E+05 | 50S ribosomal protein L12 | Protein synthesis |
sll0767 | 2.07E+06 | 9.55E+05 | 2.40E+06 | 9.92E+05 | 9.52E+05 | 7.76E+05 | 6.25E+05 | 7.37E+05 | 6.30E+05 | 50S ribosomal protein L20 | Protein synthesis |
sll1801 | 3.47E+05 | 5.18E+05 | 7.09E+05 | 1.62E+05 | 2.61E+05 | 4.74E+05 | 2.32E+05 | 5.43E+05 | 5.32E+05 | 50S ribosomal protein L23 | Protein synthesis |
sll1807 | 4.12E+05 | 6.41E+05 | 9.77E+05 | 1.72E+05 | 3.12E+05 | 5.68E+05 | 2.51E+05 | 6.14E+05 | 5.94E+05 | 50S ribosomal protein L24 | Protein synthesis |
ssl1426 | 5.89E+06 | 2.35E+06 | 5.49E+06 | 4.31E+06 | 4.18E+06 | 2.74E+06 | 2.30E+06 | 2.22E+06 | 2.17E+06 | 50S ribosomal protein L35 | Protein synthesis |
slr2067 | 1.00E+06 | 2.39E+06 | 4.47E+06 | 3.52E+05 | 1.16E+06 | 2.61E+06 | 8.80E+05 | 3.28E+06 | 3.45E+06 | Allophycocyanin alpha subunit | Energy metabolism |
slr1986 | 8.68E+05 | 1.50E+06 | 2.98E+06 | 2.53E+05 | 6.79E+05 | 1.35E+06 | 4.90E+05 | 1.72E+06 | 1.75E+06 | Allophycocyanin beta subunit | Energy metabolism |
slr1198 | 1.72E+06 | 1.22E+06 | 1.77E+06 | 1.08E+06 | 1.33E+06 | 1.10E+06 | 7.41E+05 | 1.08E+06 | 1.12E+06 | Ant ioxidant protein | Unclassified |
sll1322 | 2.11E+05 | 6.36E+05 | 8.15E+05 | 1.31E+05 | 4.50E+05 | 6.64E+05 | 3.23E+05 | 9.71E+05 | 7.65E+05 | ATP synthase A chain of CF(0) | Energy metabolism |
ssl2615 | 4.95E+05 | 1.22E+06 | 2.06E+06 | 2.69E+05 | 7.74E+05 | 1.33E+06 | 5.88E+05 | 1.82E+06 | 1.57E+06 | ATP synthase C chain of CF(0) | Energy metabolism |
sll1323 | 2.28E+05 | 5.71E+05 | 8.68E+05 | 1.17E+05 | 3.22E+05 | 6.10E+05 | 2.82E+05 | 8.06E+05 | 6.33E+05 | ATP synthase subunit b' of CF(0) | Energy metabolism |
sll1099 | 4.39E+05 | 9.53E+05 | 1.51E+06 | 1.94E+05 | 4.07E+05 | 7.88E+05 | 3.36E+05 | 9.11E+05 | 8.63E+05 | Elongation factor Tu | Protein synthesis |
ssl0020 | 2.52E+06 | 6.33E+05 | 7.00E+05 | 6.84E+05 | 7.65E+05 | 8.17E+05 | 7.10E+05 | 8.75E+05 | 7.41E+05 | Ferredoxin I, essential for growth | Energy metabolism |
sll0018 | 1.97E+05 | 7.10E+05 | 1.21E+06 | 1.36E+05 | 2.37E+05 | 7.34E+05 | 3.61E+05 | 1.04E+06 | 1.08E+06 | Fructose-bisphosphate aldolase, class II | Unclassified |
ssl0483 | 1.48E+06 | 5.07E+05 | 6.64E+05 | 6.22E+05 | 7.23E+05 | 6.12E+05 | 5.26E+05 | 6.88E+05 | 6.09E+05 | Hypothetical protein | No Data |
slr0144 | 8.77E+05 | 5.27E+05 | 5.68E+05 | 3.89E+05 | 4.55E+05 | 3.04E+05 | 2.59E+05 | 2.49E+05 | 2.15E+05 | Hypothetical protein | Hypothetical proteins |
slr1470 | 6.22E+05 | 6.04E+05 | 8.56E+05 | 4.92E+05 | 6.35E+05 | 6.70E+05 | 4.85E+05 | 7.30E+05 | 6.91E+05 | Hypothetical protein | Hypothetical proteins |
slr0373 | 4.60E+05 | 5.51E+05 | 1.65E+06 | 1.51E+05 | 3.63E+05 | 7.25E+05 | 2.74E+05 | 9.89E+05 | 8.96E+05 | Hypothetical protein | No Data |
slr0749 | 9.08E+05 | 6.46E+05 | 1.19E+06 | 7.58E+05 | 1.34E+06 | 7.50E+05 | 4.19E+05 | 4.46E+05 | 4.20E+05 | Light-independent protochlorophyllide reductase ironprotein subunit ChlL | Cofactor biosynthesis |
slr0749 | 9.08E+05 | 6.46E+05 | 1.19E+06 | 7.58E+05 | 1.34E+06 | 7.50E+05 | 4.19E+05 | 4.46E+05 | 4.20E+05 | Light-independent protochlorophyllide reductase iron protein subunit ChlL | Energy metabolism |
sll1342 | 3.21E+05 | 5.41E+05 | 7.43E+05 | 2.32E+05 | 3.29E+05 | 4.17E+05 | 2.38E+05 | 4.80E+05 | 5.42E+05 | NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase | Energy metabolism |
slr1834 | 1.46E+06 | 1.55E+07 | 3.92E+07 | 1.23E+06 | 5.28E+06 | 1.28E+07 | 3.37E+06 | 1.50E+07 | 1.66E+07 | P700 apoprotein subunit Ia | Energy metabolism |
slr1835 | 1.21E+06 | 5.21E+06 | 1.16E+07 | 6.51E+05 | 2.62E+06 | 5.15E+06 | 1.74E+06 | 5.93E+06 | 5.79E+06 | P700 apoprotein subunit Ib | Energy metabolism |
sll0819 | 1.20E+06 | 6.37E+05 | 6.10E+05 | 3.32E+05 | 2.99E+05 | 3.72E+05 | 2.59E+05 | 4.10E+05 | 3.91E+05 | Photosystem I reaction center subunit III precursor | Energy metabolism |
slr0737 | 1.85E+06 | 1.15E+06 | 2.11E+06 | 9.16E+05 | 1.10E+06 | 1.20E+06 | 8.97E+05 | 1.34E+06 | 1.38E+06 | Photosystem I subunit II | Energy metabolism |
smr0004 | 4.02E+06 | 3.59E+06 | 5.24E+06 | 1.43E+06 | 1.45E+06 | 1.78E+06 | 1.44E+06 | 1.60E+06 | 1.58E+06 | Photosystem I subunit VIII | Energy metabolism |
slr1655 | 1.08E+07 | 5.24E+06 | 5.95E+06 | 8.83E+06 | 8.55E+06 | 7.79E+06 | 5.87E+06 | 7.50E+06 | 6.75E+06 | Photosystem I subunit XI | Energy metabolism |
slr0906 | 2.96E+05 | 5.56E+05 | 4.91E+05 | 1.78E+05 | 4.12E+05 | 5.30E+05 | 2.60E+05 | 7.12E+05 | 6.19E+05 | Photosystem II core light harvest ing protein | Energy metabolism |
sll0851 | 2.98E+05 | 1.21E+06 | 2.33E+06 | 1.71E+05 | 4.95E+05 | 1.05E+06 | 3.40E+05 | 9.30E+05 | 9.78E+05 | Photosystem II CP43 protein | Energy metabolism |
slr1311 | 2.37E+06 | 1.75E+06 | 2.79E+06 | 8.49E+05 | 1.83E+06 | 2.41E+06 | 1.39E+06 | 2.73E+06 | 2.44E+06 | Photosystem II D1 protein | Energy metabolism |
sll1867 | 1.22E+06 | 1.06E+06 | 1.62E+06 | 5.25E+05 | 1.01E+06 | 1.33E+06 | 7.68E+05 | 1.54E+06 | 1.59E+06 | Photosystem II D1 protein | Energy metabolism |
sll0849 | 1.31E+05 | 1.09E+06 | 1.59E+06 | 9.21E+04 | 3.93E+05 | 1.05E+06 | 3.10E+05 | 1.21E+06 | 1.20E+06 | Photosystem II react ion center D2 protein | Energy metabolism |
slr0335 | 4.12E+05 | 1.38E+06 | 2.12E+06 | 2.41E+05 | 6.30E+05 | 1.09E+06 | 5.13E+05 | 1.30E+06 | 1.35E+06 | Phycobilisome core-membrane linker polypept ide | Energy metabolism |
sll1580 | 3.09E+06 | 2.89E+06 | 2.91E+06 | 1.93E+06 | 2.24E+06 | 2.18E+06 | 1.69E+06 | 2.23E+06 | 1.79E+06 | Phycobilisome rod linker polypept ide | Energy metabolism |
sll1579 | 2.30E+06 | 2.95E+06 | 3.31E+06 | 1.33E+06 | 2.07E+06 | 2.16E+06 | 1.46E+06 | 2.54E+06 | 2.09E+06 | Phycobilisome rod linker polypept ide | Unclassified |
slr2051 | 1.44E+06 | 6.37E+05 | 7.37E+05 | 4.63E+05 | 5.46E+05 | 6.26E+05 | 5.26E+05 | 6.77E+05 | 6.51E+05 | Phycobilisome rod-core linker polypeptide | Energy metabolism |
ssl3093 | 2.10E+06 | 1.29E+06 | 1.36E+06 | 7.71E+05 | 9.40E+05 | 8.59E+05 | 7.79E+05 | 1.04E+06 | 7.32E+05 | Phycobilisome small rod linker polypeptide | Unclassified |
sll1578 | 2.59E+07 | 5.16E+07 | 8.62E+07 | 1.43E+07 | 2.65E+07 | 4.10E+07 | 2.17E+07 | 5.20E+07 | 5.40E+07 | Phycocyanin alpha subunit | Energy metabolism |
sll1577 | 2.49E+07 | 5.74E+07 | 8.88E+07 | 1.88E+07 | 3.58E+07 | 5.52E+07 | 2.70E+07 | 7.35E+07 | 7.72E+07 | Phycocyanin beta subunit | Energy metabolism |
sll1694 | 5.95E+06 | 8.44E+05 | 1.14E+06 | 2.01E+06 | 2.12E+06 | 9.58E+05 | 1.35E+06 | 1.07E+06 | 5.81E+05 | Pilin polypept ide PilA1 | Cell envelope |
sll0199 | 8.92E+05 | 6.80E+05 | 9.96E+05 | 2.02E+05 | 5.59E+05 | 9.24E+05 | 4.93E+05 | 8.49E+05 | 7.72E+05 | Plastocyanin | Unclassified |
slr0011 | 1.94E+06 | 3.06E+06 | 6.38E+06 | 1.11E+06 | 1.85E+06 | 2.48E+06 | 1.33E+06 | 2.73E+06 | 2.32E+06 | Possible Rubisco chaperonin | Hypothetical proteins |
slr1841 | 1.24E+06 | 2.09E+06 | 3.27E+06 | 5.53E+05 | 1.31E+06 | 1.70E+06 | 7.51E+05 | 1.67E+06 | 1.89E+06 | Probable porin; major outer membrane protein | Unclassified |
slr0009 | 4.48E+05 | 1.44E+06 | 2.53E+06 | 2.81E+05 | 7.69E+05 | 1.33E+06 | 5.61E+05 | 1.70E+06 | 1.55E+06 | Ribulose bisphosphate carboxylase large subunit | Energy metabolism |
slr0012 | 5.54E+05 | 8.40E+05 | 2.10E+06 | 1.58E+05 | 2.52E+05 | 4.06E+05 | 2.72E+05 | 4.43E+05 | 3.79E+05 | Ribulose bisphosphate carboxylase small subunit | Energy metabolism |
sll1338 | 9.93E+05 | 2.56E+06 | 4.45E+06 | 5.64E+05 | 1.23E+06 | 1.57E+06 | 9.14E+05 | 1.79E+06 | 1.52E+06 | Unknown protein | No Data |
sll1951 | 7.54E+05 | 8.37E+05 | 1.25E+06 | 3.14E+05 | 6.19E+05 | 7.53E+05 | 3.27E+05 | 7.44E+05 | 8.16E+05 | Unknown protein | Unclassified |