Skip to main content

Table 3 Genes induced by ethanol exposure *

From: RNA-seq based identification and mutant validation of gene targets related to ethanol resistance in cyanobacterial Synechocystis sp. PCC 6803

Gene ID Description Ratio-Ethanol-24h-r1 vs. Control-24h Ratio-Ethanol-24h-r2 vs. Control-24h Ratio-Ethanol-48h-r1 vs. Control-48h Ethanol-48h-r2 vs. Control-48h Ethanol-72h-r1 vs. Control-72h Ratio-Ethanol-72h-r1 vs. Control-72h
sll0034 putative carboxypeptidase    2.69 1.50   
sll0250 pantothenate metabolism flavoprotein      3.00 1.91
sll0289 septum site-determining protein MinD      4.56 3.89
sll0300 riboflavin synthase alpha chain      4.33 3.33
sll0330 sepiapterine reductase      7.09 29.09
sll0368 uracil phosphoribosyltransferase      2.33 2.00
sll0374 urea transport system ATP-binding protein    2.80 3.60   
sll0384 Cations and iron carrying protein    2.31 1.70   
sll0450 cytochrome b subunit of nitric oxide reductase 1.62 4.26     
sll0536 probable potassium channel protein    2.00 1.93   
sll0540 phosphate-binding protein PstS homolog      1.57 1.79
sll0613 Holliday junction DNA helicase RuvB    1.73 1.91   
sll0621 putative c-type cytochrome biogenesis protein CcdA      2.22 2.00
sll0629 alternative photosystem I reaction center subunit X    1.94 1.72   
sll0671 probable cation transporter 4.00 4.00     
sll0686 probable cytochrome c-type biogenesis protein      3.00 3.25
sll0687 RNA polymerase ECF-type (group 3) sigma factor    3.00 6.00   
sll0759 ABC transporter ATP-binding protein      2.13 2.09
sll0759 ABC transporter ATP-binding protein      2.13 2.09
sll0792 Zinc-responsive repressor ZiaR    3.43 3.00   
sll0856 RNA polymerase ECF-type (group 3) sigma-E factor      1.89 1.61
sll1041 similar to sulfate transport ATP-binding protein CysA    2.63 1.63   
sll1051 phycocyanin alpha-subunit phycocyanobilin lyase      8.00 13.00
sll1051 phycocyanin alpha-subunit phycocyanobilin lyase      8.00 13.00
sll1170 unknown protein      2.25 1.50
sll1223 diaphorase subunit of the bidirectional hydrogenase 1.55 2.18     
sll1226 hydrogenase subunit of the bidirectional hydrogenase      1.55 1.89
sll1316 cytochrome b6-f complex iron-sulfur subunit      1.69 1.56
sll1330 two-component system response regulator OmpR subfamily    2.47 2.33   
sll1370 mannose-1-phosphate guanylyltransferase      3.25 1.88
sll1423 global nitrogen regulator    1.57 1.55   
sll1428 probable sodium-dependent transporter 7.00 6.00    5.00 2.00
sll1440 pyridoxamine 5'-phosphate oxidase      3.00 1.50
sll1471 phycobilisome rod-core linker polypeptide 3.90 2.77 3.56 3.07   
sll1473 a part of phytochrome-like sensor histidine kinase gene    1.59 1.79   
sll1483 periplasmic protein      2.00 8.40
sll1545 glutathione S-transferase    2.00 1.60   
sll1612 folylpolyglutamate synthase 2.00 2.67     
sll1679 periplasmic protease HhoA 3.35 2.42     
sll1682 alanine dehydrogenase      2.91 2.27
sll1723 probable glycosyltransferase      1.53 4.80
sll1724 probable glycosyltransferase      2.11 4.89
sll1994 porphobilinogen synthase (5-aminolevulinate dehydratase)      1.97 1.83
sll1998 putative transposase [ISY100d: 1623697–1624643]      1.67 4.00
slr0018 fumarase      2.27 1.67
slr0051 periplasmic beta-type carbonic anhydrase    1.55 1.60   
slr0070 methionyl-tRNA formyltransferase      1.62 1.69
slr0086 similar to DnaK protein      1.50 2.50
slr0089 gamma-tocopherol methyltransferase      4.60 3.80
slr0091 aldehyde dehydrogenase      7.00 11.00
slr0242 bacterioferritin comigratory protein homolog    1.58 1.65   
slr0328 low molecular weight phosphotyrosine protein phosphatase      2.75 2.00
slr0381 lactoylglutathione lyase      5.14 5.00
slr0502 cobalamin synthesis protein cobW homolog 1.75 1.88    1.83 1.67
slr0574 cytochrome P450      2.34 2.41
slr0585 argininosuccinate synthetase      2.32 2.42
slr0618 cobyric acid synthase    1.69 1.56   
slr0678 biopolymer transport ExbD like protein      2.19 2.26
slr0721 malic enzyme      1.67 2.29
slr0724 HtaR suppressor protein homolog      2.00 1.50
slr0741 transcriptional regulator      2.13 2.63
slr0758 circadian clock protein KaiC homolog    2.16 1.52   
slr0819 apolipoprotein N-acyltransferase      2.17 1.67
slr0898 ferredoxin--nitrite reductase    1.65 1.53   
slr0903 molybdopterin (MPT) converting factor, subunit 2 3.00 2.50     
slr0940 zeta-carotene desaturase    1.87 2.00 2.03 1.70
slr0942 alcohol dehydrogenase [NADP+]    1.76 1.58   
slr0946 arsenate reductase      4.50 3.50
slr0947 response regulator for energy transfer from phycobilisomes to photosystems      2.56 1.74
slr0949 Integral membrane protein of the ABC-type Nat permease NatD      14.00 7.00
slr1093 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    1.73 1.94   
slr1109 similar to ankyrin      2.09 1.53
slr1120 type 4 prepilin-like proteins leader peptide processing enzyme 8.00 3.00     
slr1185 cytochrome b6-f complex alternative iron-sulfur subunit      8.00 5.00
slr1197 SMF protein      1.73 1.53
slr1204 protease    9.52 1.96 2.45 6.65
slr1205 similar to chlorobenzene dioxygenase, ferredoxin component      4.00 4.00
slr1225 serine/threonine kinase      2.70 2.50
slr1291 NADH dehydrogenase subunit 4      2.44 2.44
slr1300 similar to 2-octaprenyl-6-methoxyphenol hydroxylase      1.59 1.59
slr1350 acyl-lipid desaturase      1.72 1.57
slr1379 quinol oxidase subunit I 1.56 1.70     
slr1418 dihydroorotate dehydrogenase      2.50 2.63
slr1452 sulfate transport system substrate-binding protein 1.83 2.00     
slr1596 a protein in the cytoplasmic membrane      2.31 2.08
slr1626 dihydroneopterin aldolase    1.80 3.30   
slr1805 two-component sensor histidine kinase      1.60 1.98
slr1828 ferredoxin, petF-like protein    2.00 2.33 5.50 9.00
slr1848 histidinol dehydrogenase      2.15 2.06
slr1848 histidinol dehydrogenase      2.15 2.06
slr1853 carboxymuconolactone decarboxylase 1.80 1.70 2.71 1.59 2.56 2.55
slr1854 unknown protein    2.10 1.84 1.88 1.89
slr1874 D-alanine--D-alanine ligase    1.84 1.88   
slr1877 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase    2.00 1.92   
slr1884 tryptophanyl-tRNA synthetase      2.09 1.72
slr1910 probable N-acetylmuramoyl-L-alanine amidase      1.71 2.00
slr1933 dTDP-4-dehydrorhamnose 3,5-epimerase      3.50 5.50
slr1938 putative translation initiation factor EIF-2b subunit 1    2.45 2.00   
slr1962 probable extracellular solute-binding protein    1.79 1.50   
slr1993 PHA-specific beta-ketothiolase      1.93 2.00
slr1994 PHA-specific acetoacetyl-CoA reductase 6.00 9.00 5.00 2.00 2.57 2.29
slr2033 membrane-associated rubredoxin 1.85 3.38    2.23 1.56
slr2114 perosamine synthetase      7.00 6.00
slr2131 RND multidrug efflux transporter      3.45 3.44
slr2143 L-cysteine/cystine lyase 1.67 2.56     
smr0003 cytochrome b6-f complex subunit PetM      2.40 3.40
smr0009 photosystem II PsbN protein    1.56 1.78   
ssl0563 photosystem I subunit VII      1.76 1.56
ssl0707 nitrogen regulatory protein P-II    2.00 1.64   
ssl2153 probable ribose phosphate isomerase B    4.50 2.50   
ssl2296 pterin-4a-carbinolamine dehydratase    1.75 1.86   
ssl2542 high light-inducible polypeptide HliA, CAB/ELIP/HLIP superfamily      4.00 5.00
ssl3580 putative hydrogenase expression/formation protein HypC    3.15 2.05   
ssr1176 putative transposase    1.50 1.83   
ssr1480 putative RNA-binding protein    2.42 1.92   
  1. * Induced genes encoding hypothetical proteins are provided in Additional file3: Table S3.