TY - JOUR AU - Khan, S. A. AU - Hussain, M. Z. AU - Prasad, S. AU - Banerjee, U. C. AU - Rashmi PY - 2009 DA - 2009// TI - Prospects of biodiesel production from microalgae in India JO - Renew Sust Energ Rev VL - 13 UR - https://doi.org/10.1016/j.rser.2009.04.005 DO - 10.1016/j.rser.2009.04.005 ID - Khan2009 ER - TY - JOUR AU - Balat, M. AU - Balat, M. PY - 2009 DA - 2009// TI - Political, economic and environmental impacts of biomass-based hydrogen JO - Int J Hydrogen Energ VL - 34 UR - https://doi.org/10.1016/j.ijhydene.2009.02.067 DO - 10.1016/j.ijhydene.2009.02.067 ID - Balat2009 ER - TY - JOUR AU - Bugg, T. D. AU - Ahmad, M. AU - Hardiman, E. M. AU - Rahmanpour, R. PY - 2011 DA - 2011// TI - Pathways for degradation of lignin in bacteria and fungi JO - Nat Prod Rep VL - 28 UR - https://doi.org/10.1039/c1np00042j DO - 10.1039/c1np00042j ID - Bugg2011 ER - TY - CHAP AU - Hammel, K. E. ED - Cadish, G. ED - Giller, K. E. PY - 1997 DA - 1997// TI - Fungal degradation of lignin BT - Driven by Nature: Plant Litter Quality and Decomposition PB - CAB International CY - Wallingford, UK ID - Hammel1997 ER - TY - JOUR AU - Bugg, T. D. H. AU - Ahmad, M. AU - Hardiman, E. M. AU - Singh, R. PY - 2010 DA - 2010// TI - The emerging role for bacteria in lignin degradation and bio-product formation JO - Curr Opin Biotechnol VL - 22 UR - https://doi.org/10.1016/j.ceb.2010.01.003 DO - 10.1016/j.ceb.2010.01.003 ID - Bugg2010 ER - TY - JOUR AU - Crawford, D. L. PY - 1980 DA - 1980// TI - Microbial degradation of lignin JO - Enzyme Microb Technol VL - 2 UR - https://doi.org/10.1016/0141-0229(80)90003-4 DO - 10.1016/0141-0229(80)90003-4 ID - Crawford1980 ER - TY - JOUR AU - Ruiz-Duenas, F. J. AU - Martinez, A. T. PY - 2009 DA - 2009// TI - Microbial degradation of lignin: how a bulky recalcitrant polymer is efficiently recycled in nature and how we can take advantage of this JO - Microb Biotechnol VL - 2 UR - https://doi.org/10.1111/j.1751-7915.2008.00078.x DO - 10.1111/j.1751-7915.2008.00078.x ID - Ruiz-Duenas2009 ER - TY - JOUR AU - Ahmad, M. AU - Taylor, C. R. AU - Pink, D. AU - Burton, K. AU - Eastwood, D. AU - Bending, G. R. AU - Bugg, T. D. H. PY - 2010 DA - 2010// TI - Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders JO - Mol Biosyst VL - 6 UR - https://doi.org/10.1039/b908966g DO - 10.1039/b908966g ID - Ahmad2010 ER - TY - JOUR AU - Masai, E. AU - Katayama, Y. AU - Fukuda, M. PY - 2007 DA - 2007// TI - Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds JO - Biosci Biotech Bioch VL - 71 UR - https://doi.org/10.1271/bbb.60437 DO - 10.1271/bbb.60437 ID - Masai2007 ER - TY - JOUR AU - Tuor, U. AU - Winterhalter, K. AU - Fiechter, A. PY - 1995 DA - 1995// TI - Enzymes of white-rot fungi involved in lignin degradation and ecological determinants of wood decay JO - J Biotechnol VL - 41 UR - https://doi.org/10.1016/0168-1656(95)00042-O DO - 10.1016/0168-1656(95)00042-O ID - Tuor1995 ER - TY - JOUR AU - Ramachandra, M. AU - Crawford, D. L. AU - Hertel, G. PY - 1988 DA - 1988// TI - Characterization of an extracellular lignin peroxidase of the lignocellulolytic actinomycete Streptomyces viridosporus JO - Appl Environ Microbiol VL - 54 ID - Ramachandra1988 ER - TY - JOUR AU - Zimmermann, W. PY - 1990 DA - 1990// TI - Degradation of lignin by bacteria JO - J Biotechnol VL - 13 UR - https://doi.org/10.1016/0168-1656(90)90098-V DO - 10.1016/0168-1656(90)90098-V ID - Zimmermann1990 ER - TY - JOUR AU - Leisola, M. AU - Brown, C. AU - Laurila, M. AU - Fiechter, A. PY - 1982 DA - 1982// TI - Polysaccharide synthesis by Phanerochaete chrysosporium during degradation of kraft lignin JO - Eur J Appl Microbiol Biotechnol VL - 15 UR - https://doi.org/10.1007/BF00511245 DO - 10.1007/BF00511245 ID - Leisola1982 ER - TY - JOUR AU - Ball, A. S. AU - Betts, W. B. AU - McCarthy, A. J. PY - 1989 DA - 1989// TI - Degradation of lignin-related compounds by actinomycetes JO - Appl Environ Microbiol VL - 55 ID - Ball1989 ER - TY - JOUR AU - Bourbonnais, R. AU - Paice, M. G. AU - Reid, I. D. AU - Lanthier, P. AU - Yaguchi, M. PY - 1995 DA - 1995// TI - Lignin oxidation by laccase isozymes from Trametes versicolor and role of the mediator 2,2'-azinobis(3-ethylbenzthiazoline-6-sulfonate) in kraft lignin depolymerization JO - Appl Environ Microbiol VL - 61 ID - Bourbonnais1995 ER - TY - JOUR AU - Lund, M. AU - Ragauskas, A. J. PY - 2001 DA - 2001// TI - Enzymatic modification of kraft lignin through oxidative coupling with water-soluble phenols JO - Appl Microbiol Biotechnol VL - 55 UR - https://doi.org/10.1007/s002530000561 DO - 10.1007/s002530000561 ID - Lund2001 ER - TY - JOUR AU - Raj, A. AU - Chandra, R. AU - Reddy, M. M. K. AU - Purohit, H. J. AU - Kapley, A. PY - 2007 DA - 2007// TI - Biodegradation of kraft lignin by a newly isolated bacterial strain, Aneurinibacillus aneurinilyticus from the sludge of a pulp paper mill JO - World J Microb Biotechnol VL - 23 UR - https://doi.org/10.1007/s11274-006-9299-x DO - 10.1007/s11274-006-9299-x ID - Raj2007 ER - TY - JOUR AU - Chen, Y. H. AU - Chai, L. Y. AU - Zhu, Y. H. AU - Yang, Z. H. AU - Zheng, Y. AU - Zhang, H. PY - 2012 DA - 2012// TI - Biodegradation of kraft lignin by a bacterial strain Comamonas sp. B-9 isolated from eroded bamboo slips JO - J Appl Microbiol VL - 112 UR - https://doi.org/10.1111/j.1365-2672.2012.05275.x DO - 10.1111/j.1365-2672.2012.05275.x ID - Chen2012 ER - TY - JOUR AU - Raj, A. AU - Reddy, M. M. K. AU - Chandra, R. AU - Purohit, H. J. AU - Kapley, A. PY - 2007 DA - 2007// TI - Biodegradation of Kraft-lignin by Bacillus sp. isolated from sludge of pulp and paper mill JO - Biodegradation VL - 18 UR - https://doi.org/10.1007/s10532-007-9107-9 DO - 10.1007/s10532-007-9107-9 ID - Raj2007 ER - TY - JOUR AU - Giroux, H. AU - Vidal, P. AU - Bouchard, J. AU - Lamy, F. PY - 1988 DA - 1988// TI - Degradation of Kraft Indulin Lignin by Streptomyces viridosporus and Streptomyces badius JO - Appl Environ Microbiol VL - 54 ID - Giroux1988 ER - TY - JOUR AU - Chandra, R. AU - Abhishek, A. PY - 2011 DA - 2011// TI - Bacterial decolorization of black liquor in axenic and mixedcondition and characterization of metabolites JO - Biodegradation VL - 22 UR - https://doi.org/10.1007/s10532-010-9433-1 DO - 10.1007/s10532-010-9433-1 ID - Chandra2011 ER - TY - JOUR AU - Perez, J. AU - Dorado, J. M. AU - Rubia, T. D. AU - Martinez, J. PY - 2002 DA - 2002// TI - Biodegradation and biological treatment of cellulose, hemicellulose and lignin: An overview JO - Int Microbiol VL - 5 UR - https://doi.org/10.1007/s10123-002-0062-3 DO - 10.1007/s10123-002-0062-3 ID - Perez2002 ER - TY - JOUR AU - Hofrichter, M. PY - 2002 DA - 2002// TI - Review: Lignin conversion by manganese peroxidase (MnP) JO - Enzyme Microb Technol VL - 30 UR - https://doi.org/10.1016/S0141-0229(01)00528-2 DO - 10.1016/S0141-0229(01)00528-2 ID - Hofrichter2002 ER - TY - JOUR AU - Leonowicz, A. AU - Cho, N. S. AU - Luterek, J. AU - Wilkolazka, A. AU - Wojtas-Wasilewska, M. AU - Matuzewska, A. AU - Hofrichter, M. AU - Wesenberg, D. AU - Rogalski, J. PY - 2001 DA - 2001// TI - Fungal laccase: properties and activity on lignin JO - J Basic Microbiol VL - 41 UR - https://doi.org/3.0.CO;2-T DO - 3.0.CO;2-T ID - Leonowicz2001 ER - TY - JOUR AU - Dick, G. J. AU - Torpey, J. W. AU - Beveridge, T. J. AU - Tebo, B. A. PY - 2008 DA - 2008// TI - Direct identification of a bacterial manganese (II) oxidase, the multicopper oxidase MnxG, from spores of several different marine Bacillus species JO - Appl Environ Microb VL - 74 UR - https://doi.org/10.1128/AEM.01240-07 DO - 10.1128/AEM.01240-07 ID - Dick2008 ER - TY - JOUR AU - Hernes, P. J. AU - Benner, R. PY - 2003 DA - 2003// TI - Photochemical and microbial degradation of dissolved lignin phenols: implications for the fate of terrigenous dissolved organic matter in marine environments JO - J Geophys Res VL - 108 ID - Hernes2003 ER - TY - JOUR AU - Hernandez, M. AU - Rodriguez, J. AU - Perez, M. I. AU - Ball, A. S. AU - Arias, M. E. PY - 1997 DA - 1997// TI - 13C NMR cross polarization and magic angle spinning (CPMAS) and gas chromatography/mass spectroscopy analysis of the products from a soda pulp mill effluent decolourised with two Streptomyces strains JO - Appl Microbiol Biot VL - 74 ID - Hernandez1997 ER - TY - JOUR AU - Jose, I. J. AU - Baltasar, M. AU - Jose, L. G. AU - Eduardo, D. PY - 2002 DA - 2002// TI - Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440 JO - Environ Microbiol VL - 4 UR - https://doi.org/10.1046/j.1462-2920.2002.00370.x DO - 10.1046/j.1462-2920.2002.00370.x ID - Jose2002 ER - TY - JOUR AU - Perez-Pantoja, D. AU - De la Iglesia, R. AU - Pieper, D. H. AU - Gonzalez, B. PY - 2008 DA - 2008// TI - Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134 JO - FEMS Microbiol Rev VL - 32 UR - https://doi.org/10.1111/j.1574-6976.2008.00122.x DO - 10.1111/j.1574-6976.2008.00122.x ID - Perez-Pantoja2008 ER - TY - JOUR AU - Diaz, E. AU - Ferrandez, A. AU - Prieto, M. A. AU - Garcia, J. L. PY - 2001 DA - 2001// TI - Biodegradation of aromatic compounds by Escherichia coli JO - Microbiol Mol Biol Rev VL - 65 UR - https://doi.org/10.1128/MMBR.65.4.523-569.2001 DO - 10.1128/MMBR.65.4.523-569.2001 ID - Diaz2001 ER - TY - JOUR AU - Harwood, C. S. AU - Parales, R. E. PY - 1996 DA - 1996// TI - The beta-ketoadipate pathway and the biology of self-identity JO - Annu Rev Microbiol VL - 50 UR - https://doi.org/10.1146/annurev.micro.50.1.553 DO - 10.1146/annurev.micro.50.1.553 ID - Harwood1996 ER - TY - JOUR AU - Cserháti, M. AU - Kriszt, B. AU - Szoboszlay, S. AU - Tóth, Á. AU - Szabó, I. AU - Táncsics, A. AU - Nagy, I. AU - Horváth, B. AU - Nagy, I. AU - Kukolya, J. PY - 2012 DA - 2012// TI - De novo genome project of Cupriavidus basilensis OR16 JO - J Bacteriol VL - 194 UR - https://doi.org/10.1128/JB.06752-11 DO - 10.1128/JB.06752-11 ID - Cserháti2012 ER - TY - JOUR AU - Rothmel, R. K. AU - Aldrich, T. L. AU - Houghton, J. E. AU - Coco, W. M. AU - Ornston, L. N. AU - Chakrabarty, A. M. PY - 1990 DA - 1990// TI - Nucleotide sequencing and characterization of Pseudomonas putida catR: a positive regulator of the catBC operon is a member of the LysR family JO - J Bacteriol VL - 172 ID - Rothmel1990 ER - TY - JOUR AU - Parsek, M. R. AU - Shinabarger, D. L. AU - Rothmel, R. K. AU - Chakrabarty, A. M. PY - 1992 DA - 1992// TI - Roles of CatR and cis, cis-Muconate in Activation of the catBC Operon, Which Is Involved in Benzoate Degradation in Pseudomonas putida JO - J Bacteriol VL - 174 ID - Parsek1992 ER - TY - JOUR AU - Segura, A. AU - Bunz, P. V. AU - D’Argenio, D. A. AU - Ornston, L. N. PY - 1999 DA - 1999// TI - Genetic analysis of a chromosomal region containing vanA and vanB, genes required for conversion of either ferulate or vanillate to protocatechuate in Acinetobacter JO - J Bacteriol VL - 181 ID - Segura1999 ER - TY - JOUR AU - Zhou, N. Y. AU - Al-Dulayymi, J. AU - Baird, M. S. AU - Williams, P. A. PY - 2002 DA - 2002// TI - Salicylate-5-hydroxylase from Ralstonia sp. strain U2: a monooxygenase with close relationships to and shared electron transport proteins with naphthalene dioxygenase JO - J Bacteriol VL - 184 UR - https://doi.org/10.1128/JB.184.6.1547-1555.2002 DO - 10.1128/JB.184.6.1547-1555.2002 ID - Zhou2002 ER - TY - JOUR AU - Hiromoto, T. AU - Fujiwara, S. AU - Hosokawa, K. AU - Yamaguchi, H. PY - 2006 DA - 2006// TI - Crystal structure of 3-hydroxybenzoate hydroxylase from Comamonas testosteroni has a large tunnel for substrate and oxygen access to the active site JO - J Mol Biol VL - 364 UR - https://doi.org/10.1016/j.jmb.2006.09.031 DO - 10.1016/j.jmb.2006.09.031 ID - Hiromoto2006 ER - TY - JOUR AU - Mashetty, S. B. AU - Manohar, S. AU - Karegoudar, T. B. PY - 1996 DA - 1996// TI - Degradation of 3-hydroxybenzoic acid by a Bacillus species JO - Indian J Biochem Biophys VL - 33 ID - Mashetty1996 ER - TY - JOUR AU - Nakagawa, Y. AU - Sakamoto, Y. AU - Kikuchi, S. AU - Sato, T. AU - Yano, A. PY - 2010 DA - 2010// TI - A chimeric laccase with hybrid properties of the parental Lentinula edodes laccases JO - Microbiol Res VL - 165 UR - https://doi.org/10.1016/j.micres.2009.08.006 DO - 10.1016/j.micres.2009.08.006 ID - Nakagawa2010 ER - TY - JOUR AU - Orth, A. B. AU - Royse, D. J. AU - Tien, M. PY - 1993 DA - 1993// TI - Ubiquity of lignin-degrading peroxidases among various wood-degrading fungi JO - Appl Environ Microb VL - 59 ID - Orth1993 ER - TY - JOUR AU - Kapich, A. N. AU - Prior, B. A. AU - Botha, A. AU - Galkin, S. AU - Lundell, T. AU - Hatakka, A. PY - 2004 DA - 2004// TI - Effect of lignocellulose-containing substrates on production of ligninolytic peroxidases in submerged cultures of Phanerochaete chrysosporium ME-446 JO - Enzyme Microb Tech VL - 34 UR - https://doi.org/10.1016/j.enzmictec.2003.10.004 DO - 10.1016/j.enzmictec.2003.10.004 ID - Kapich2004 ER - TY - JOUR AU - Delcher, A. L. AU - Bratke, K. A. AU - Powers, E. C. AU - Salzberg, S. L. PY - 2007 DA - 2007// TI - Identifying bacterial genes and endosymbiont DNA with Glimmer JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm009 DO - 10.1093/bioinformatics/btm009 ID - Delcher2007 ER - TY - JOUR AU - Griffiths-Jones, S. AU - Moxon, S. AU - Marshall, M. AU - Khanna, A. AU - Eddy, S. R. AU - Bateman, A. PY - 2005 DA - 2005// TI - Rfam: annotating non-coding RNAs in complete genomes JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki081 DO - 10.1093/nar/gki081 ID - Griffiths-Jones2005 ER - TY - JOUR AU - Lagesen, K. AU - Hallin, P. AU - Rodland, E. A. AU - Staerfeldt, H. H. AU - Rognes, T. AU - Ussery, D. W. PY - 2007 DA - 2007// TI - RNAmmer: consistent and rapid annotation of ribosomal RNA genes JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm160 DO - 10.1093/nar/gkm160 ID - Lagesen2007 ER - TY - JOUR AU - Schattner, P. AU - Brooks, A. N. AU - Lowe, T. M. PY - 2005 DA - 2005// TI - The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki366 DO - 10.1093/nar/gki366 ID - Schattner2005 ER -