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Table 2 Genes encoding the β-ketoadipate pathway and peripheral reactions

From: Characterization and genomic analysis of kraft lignin biodegradation by the beta-proteobacterium Cupriavidus basilensis B-8

Gene (orf no.)1 Gene product Size (aa)2 Function Organism % Identity/aa Accession no.
catA (002058) CatA 304 Catechol 1,2-dioxygenase Lutiella nitroferrum 2002 80/304 ZP_03698425.1
catB (007569) CatB 142 Muconate cycloisomerase Cupriavidus basilensis OR16 91/382 ZP_09625347.1
catC1 (007567) CatC1 92 Muconolactone δ-isomerase Cupriavidus basilensis OR16 93/92 ZP_09625348.1
catC2 (006855) CatC2 91 Muconolactone δ-isomerase Alicycliphilus denitrificans BC 79/92 YP_004127266.1
catD (006858) CatD 273 3-oxoadipate enol-lactonase Acidovorax avenae subsp. avenae ATCC 19860 68/273 YP_004236298.1
catR (002057) CatR 307 Transcriptional activator (LysR family) Burkholderia cenocepacia J2315 83/307 YP_002233374.1
benA (002059) BenA 462 Benzoate dioxygenase large subunit Cupriavidus basilensis OR16 96/462 ZP_09623640.1
benB (002060) BenB 166 Benzoate dioxygenase small subunit Cupriavidus basilensis OR16 93/166 ZP_09623641.1
benC (002061) BenC 339 Benzoate dioxygenase reductase subunit Cupriavidus metallidurans CH34 77/339 YP_587015.1
benD (002063) BenD 108 2-Hydro-1,2-dihydroxybenzoate dehydrogenase Ralstonia eutropha JMP134 91/108 YP_298602.1
pobA (007971) PobA2 389 4-Hydroxybenzoate 3-Monooxygenase Cupriavidus basilensis OR16 92/389 ZP_09625369.1
pobB (001362) PobA1 394 4-Hydroxybenzoate 3-Monooxygenase Pseudomonas putida W619 92/394 YP_001748818.1
pcaB (001344) PcaB 453 3-Carboxy-cis,cis-muconate cycloisomerase Streptomyces hygroscopicus ATCC 53653 70/453 ZP_07293737.1
pcaC1 (003089) PcaC1 125 4-Carboxymuconolactone decarboxylase Pseudomonas fulva 12-X 82/125 YP_004473183.1
pcaC2 (005251) PcaC2 139 4-Carboxymuconolactone decarboxylase Cupriavidus basilensis OR16 90/139 ZP_09624697.1
pcaD1 (000893) PcaD1 280 3-Oxoadipate enol-lactonase Cupriavidus basilensis OR16 86/280 ZP_09627578.1
pcaD2 (006858) PcaD2 273 3-Oxoadipate enol-lactonase Acidovorax avenae subsp. avenae ATCC 19860 68/273 YP_004236298.1
pcaF (003109) PcaF 400 β-Ketoadipyl CoA thiolase Cupriavidus basilensis OR16 98/400 ZP_09627621.1
pcaG (002623) PcaG 192 Protocatechuate 3,4-dioxygenase, α subunit Cupriavidus basilensis OR16 88/192 ZP_09628855.1
pcaH (002624) PcaH 241 Protocatechuate 3,4-dioxygenase, β subunit Cupriavidus basilensis OR16 93/241 ZP_09628856.1
pcaI1 (003111) PcaI1 227 β-Ketoadipate succinyl-CoA transferase α subunit Ralstonia eutropha H16 93/227 YP_728364.1
pcaI2 (000701) PcaI2 252 β-Ketoadipate succinyl-CoA transferase α subunit Burkholderia xenovorans LB400 75/252 YP_554660.1
pcaI3 (003203) PcaI3 251 β-Ketoadipate succinyl-CoA transferase α subunit Bordetella petrii DSM 12804 57/251 YP_001632201.1
pcaI4 (002146) PcaI4 233 β-Ketoadipate succinyl-CoA transferase α subunit Cupriavidus basilensis OR16 95/233 ZP_09628963.1
pcaJ1 (003112) PcaJ1 215 β-Ketoadipate succinyl-CoA transferase β subunit Cupriavidus basilensis OR16 95/215 ZP_09627620.1
pcaJ2 (000700) PcaJ2 220 β-Ketoadipate succinyl-CoA transferase β subunit Bordetella petrii DSM 12804 68/220 YP_001633147.1
pcaJ3 (003202) PcaJ3 211 β-Ketoadipate succinyl-CoA transferase β subunit Cupriavidus basilensis OR16 91/211 ZP_09626665.1
pcaJ4 (002145) PcaJ4 205 β-Ketoadipate succinyl-CoA transferase β subunit Cupriavidus basilensis OR16 99/205 ZP_09628964.1
pcaK (003417) PcaK 446 4-Hydroxybenzoate transporter Cupriavidus basilensis OR16 93/446 ZP_09623076.1
pcaL (006326) PcaL 399 3-Oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase Ralstonia eutropha H16 74/399 YP_841800.1
pcaQ (002625) PcaQ 266 Transcriptional regulator (LysR family) Cupriavidus basilensis OR16 77/266 ZP_09628857.1
pcaT (001951) PcaT 436 β-Ketoadipate transporter Pseudomonas syringae pv. phaseolicola 1448A 78/436 YP_276146.1
hcaA (005714) HcaA 280 ρ-Hydroxycinnamoyl-CoA hydratase/lyase Burkholderia glumae BGR1 93/280 YP_002908324.1
hcaB (005963) HcaB 397 Vanillin dehydrogenase Burkholderia thailandensis MSMB43 86/397 ZP_02469116.1
hcaC (001154) HcaC 620 Feruloyl-CoA synthase Azotobacter vinelandii DJ 56/620 YP_002801316.1
hcaD1 (003030) HcaD1 395 Acyl-CoA dehydrogenase Cupriavidus basilensis OR16 95/395 ZP_09626604.1
hcaD2 (003645) HcaD2 383 Acyl-CoA dehydrogenase Cupriavidus basilensis OR16 95/383 ZP_09624899.1
vanA1 (007066) VanA1 351 Vanillate-O-demethylase oxygenase subunit Ralstonia solanacearum MolK2 80/351 CAQ18072.1
vanA2 (001443) VanA2 340 Vanillate-O-demethylase oxygenase subunit Cupriavidus metallidurans CH34 38/340 YP_587674.1
vanB1 (007067) VanB1 315 Vanillate-O-demethylase reductase subunit Pseudomonas syringae pv. tomato str. DC3000 56/315 NP_792703.1
vanB2 (001445) VanB2 315 Vanillate-O-demethylase reductase subunit Halomonas elongata DSM 2581 55/315 YP_003899010.1
vanR (7065) VanR 258 Transcriptional regulator (GntR family) Cupriavidus basilensis OR16 92/258 ZP_09625218.1
hcaK (002970) HcaK 371 Hydroxycinnamate transporter Ralstonia eutropha JMP134 84/371 YP_299063.1
hcaR (002968) HcaR 164 Transcriptional activator (MarR family) Ralstonia eutropha JMP134 75/164 YP_299066.1
hcaX (002969) HcaX 404 Porin transmembrane protein Ralstonia eutropha JMP134 88/404 YP_299064.1
  1. a. Indicates the open reading frame number in the Additional file 1.
  2. b. aa, number of amino acids.