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Table 3 Genes encoding catabolic pathways for phenols and its derivatives degradation

From: Characterization and genomic analysis of kraft lignin biodegradation by the beta-proteobacterium Cupriavidus basilensis B-8

Gene (orf no.)1 Gene product Size (aa)2 Function Organism % Identity/aa Accession no.
phlB (007044) PhlB 310 Catechol-2,3-dioxygenase Ralstonia sp. KN1 97/310 BAA84125.1
phlC (007045) PhlC 484 2-Hydroxymuconic semialdehyde Cupriavidus basilensis OR16 96/484 ZP_09625234.1
phlD1 (001164) PhlD1 279 2-Hydroxymuconic semialdehyde hydrolase Azotobacter vinelandii DJ 72/279 YP_002801325.1
phlD2 (002956) PhlD2 291 2-Hydroxymuconic semialdehyde hydrolase Burkholderia thailandensis MSMB43 69/291 ZP_02463428.1
phlE (007046) PhlE 260 2-Hydroxypent-2,4-dienoate hydratase Ralstonia eutropha H16 91/260 YP_728710.1
phlF (008422) PhlF 313 Acetaldehyde dehydrogenase (acylating) Pseudomonas resinovorans 82/313 NP_758577.1
phlG (008421) PhlG 335 4-Hydroxy-2-oxovalerate aldolase Dechloromonas aromatica RCB 82/335 YP_286438.1
phlH (007047) PhlH 262 4-Oxalocrotonate decarboxylase Cupriavidus basilensis OR16 95/262 ZP_09625232.1
phlI (007048) PhlI 63 4-Oxalocrotonate isomerase Cupriavidus basilensis OR16 90/63 ZP_09625231.1
phlK (007037) PhlK 72 Phenol hydroxylase subunit Ralstonia sp. KN1 93/72 BAA84118.1
phlL (007038) PhlL 331 Phenol hydroxylase subunit Ralstonia sp. KN1 95/331 BAA84119.1
phlM (007039) PhlM 94 Phenol hydroxylase subunit Cupriavidus basilensis OR16 95/94 ZP_09625240.1
phlN (007040) PhlN 504 Phenol hydroxylase subunit Ralstonia sp. KN1 97/504 BAA84121.1
phlO (007041) PhlO 119 Phenol hydroxylase subunit Ralstonia sp. KN1 90/119 BAA84122.1
phlP (007042) PhlP 355 Phenol hydroxylase subunit Cupriavidus basilensis OR16 93/355 ZP_09625237.1
phlQ (007043) PhlQ 111 Ferredoxin Ralstonia sp. KN1 89/111 BAA84124.1
phlR (007035) PhlR 571 Phenol hydroxylase regulator protein Cupriavidus basilensis OR16 95/571 ZP_09625495.1
mmlF (000701) MmlF 252 Oxoadipate-CoA Transferase α subunit Ralstonia eutropha H16 88/252 NP_943023.1
mmlG (000700) MmlG 220 Oxoadipate-CoA Transferase β subunit Cupriavidus necator N-1 91/220 YP_004687736.1
mmlH (000699) MmlH 428 Muconolactone transporter Ralstonia eutropha JMP13 86/428 YP_295715.1
mmlI (000698) MmlI 112 4-Methylmuconolactone methylisomerase Ralstonia eutropha H16 83/112 NP_943020.1
mmlJ (000697) MmlJ 87 Methylmuconolactone isomerase Cupriavidus necator N-1 83/87 YP_004687733.1
mmlL (000704) MmlL 296 Hypothetical protein (Zn-dependent hydrolases) Ralstonia eutropha H16 16/296 NP_943025.1
mmlR (000703) MmlR 304 Transcriptional activator (LysR family) Ralstonia eutropha H16 91/304 NP_943024.1
  1. a. Indicates the open reading frame number in the Additional file 1.
  2. b. aa, number of amino acids.