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Table 3 Genes encoding catabolic pathways for phenols and its derivatives degradation
| Gene (orf no.)1 | Gene product | Size (aa)2 | Function | Organism | % Identity/aa | Accession no. |
|---|---|---|---|---|---|---|
| phlB (007044) | PhlB | 310 | Catechol-2,3-dioxygenase | Ralstonia sp. KN1 | 97/310 | BAA84125.1 |
| phlC (007045) | PhlC | 484 | 2-Hydroxymuconic semialdehyde | Cupriavidus basilensis OR16 | 96/484 | ZP_09625234.1 |
| phlD1 (001164) | PhlD1 | 279 | 2-Hydroxymuconic semialdehyde hydrolase | Azotobacter vinelandii DJ | 72/279 | YP_002801325.1 |
| phlD2 (002956) | PhlD2 | 291 | 2-Hydroxymuconic semialdehyde hydrolase | Burkholderia thailandensis MSMB43 | 69/291 | ZP_02463428.1 |
| phlE (007046) | PhlE | 260 | 2-Hydroxypent-2,4-dienoate hydratase | Ralstonia eutropha H16 | 91/260 | YP_728710.1 |
| phlF (008422) | PhlF | 313 | Acetaldehyde dehydrogenase (acylating) | Pseudomonas resinovorans | 82/313 | NP_758577.1 |
| phlG (008421) | PhlG | 335 | 4-Hydroxy-2-oxovalerate aldolase | Dechloromonas aromatica RCB | 82/335 | YP_286438.1 |
| phlH (007047) | PhlH | 262 | 4-Oxalocrotonate decarboxylase | Cupriavidus basilensis OR16 | 95/262 | ZP_09625232.1 |
| phlI (007048) | PhlI | 63 | 4-Oxalocrotonate isomerase | Cupriavidus basilensis OR16 | 90/63 | ZP_09625231.1 |
| phlK (007037) | PhlK | 72 | Phenol hydroxylase subunit | Ralstonia sp. KN1 | 93/72 | BAA84118.1 |
| phlL (007038) | PhlL | 331 | Phenol hydroxylase subunit | Ralstonia sp. KN1 | 95/331 | BAA84119.1 |
| phlM (007039) | PhlM | 94 | Phenol hydroxylase subunit | Cupriavidus basilensis OR16 | 95/94 | ZP_09625240.1 |
| phlN (007040) | PhlN | 504 | Phenol hydroxylase subunit | Ralstonia sp. KN1 | 97/504 | BAA84121.1 |
| phlO (007041) | PhlO | 119 | Phenol hydroxylase subunit | Ralstonia sp. KN1 | 90/119 | BAA84122.1 |
| phlP (007042) | PhlP | 355 | Phenol hydroxylase subunit | Cupriavidus basilensis OR16 | 93/355 | ZP_09625237.1 |
| phlQ (007043) | PhlQ | 111 | Ferredoxin | Ralstonia sp. KN1 | 89/111 | BAA84124.1 |
| phlR (007035) | PhlR | 571 | Phenol hydroxylase regulator protein | Cupriavidus basilensis OR16 | 95/571 | ZP_09625495.1 |
| mmlF (000701) | MmlF | 252 | Oxoadipate-CoA Transferase α subunit | Ralstonia eutropha H16 | 88/252 | NP_943023.1 |
| mmlG (000700) | MmlG | 220 | Oxoadipate-CoA Transferase β subunit | Cupriavidus necator N-1 | 91/220 | YP_004687736.1 |
| mmlH (000699) | MmlH | 428 | Muconolactone transporter | Ralstonia eutropha JMP13 | 86/428 | YP_295715.1 |
| mmlI (000698) | MmlI | 112 | 4-Methylmuconolactone methylisomerase | Ralstonia eutropha H16 | 83/112 | NP_943020.1 |
| mmlJ (000697) | MmlJ | 87 | Methylmuconolactone isomerase | Cupriavidus necator N-1 | 83/87 | YP_004687733.1 |
| mmlL (000704) | MmlL | 296 | Hypothetical protein (Zn-dependent hydrolases) | Ralstonia eutropha H16 | 16/296 | NP_943025.1 |
| mmlR (000703) | MmlR | 304 | Transcriptional activator (LysR family) | Ralstonia eutropha H16 | 91/304 | NP_943024.1 |
