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Table 4 Genes encoding gentisate pathways and peripheral reactions

From: Characterization and genomic analysis of kraft lignin biodegradation by the beta-proteobacterium Cupriavidus basilensis B-8

Gene (orf no.)1

Gene product

Size (aa)2

Function

Organism

% Identity/aa

Accession no.

hybR (000498)

HybR

306

LysR-like regulator protein

Ralstonia solanacearum UW551

80/306

ZP_00946271.1

hybA (000499)

HybA

328

Putative ferredoxin oxidoreductase

Ralstonia solanacearum Po82

70/328

YP_006030105.1

hybB (000500)

HybB

418

Salicylate-5-hydroxylase large oxygenase component

Ralstonia solanacearum UW551

83/418

ZP_00946273.1

hybC (000501)

HybC

157

Salicylate-5-hydroxylase small oxygenase component

Ralstonia solanacearum MolK2

72/157

CAQ37385.1

hybD (000502)

HybD

103

Salicylate 5-hydroxylase ferredoxin component

Achromobacter xylosoxidans A8

66/103

YP_195869.1

mhbR (003412)

MhbR

319

Transcriptional regulator (LysR family)

Cupriavidus necator N-1

77/316

YP_004681033.1

mhbD (003413)

MhbD

348

Gentisate 1,2-dioxygenase

Cupriavidus basilensis OR16

95/348

ZP_09623073.1

mhbH (003414)

MhbH

232

Fumarylacetoacetate hydrolase

Cupriavidus basilensis OR16

91/232

ZP_09623074.1

mhbI (003415)

MhbI

214

Maleylpyruvate isomerase

Ralstonia eutropha H16

76/214

YP_729032.1

mhbM (003416)

MhbM

413

3-Hydroxybenzoate-6-hydroxylase

Burkholderia multivorans CGD1

82/413

ZP_03585707.1

mhbT (003417)

MhbT

446

Putative 3-hydroxybenzoate transporter

Burkholderia sp. NCIMB 10467

59/446

ABW22835.1

  1. a. Indicates the open reading frame number in the Additional file 1.
  2. b. aa, number of amino acids.