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Table 2 Comparisons of homologues between C. moewusii and other four green algae with reference genome sequences by mapping, BlastN and BlastX

From: De novo transcriptomic analysis of hydrogen production in the green alga Chlamydomonas moewusii through RNA-Seq

Algal reference Cre ChlN Coc Vca
Reference Transcripts # 17,114 55,307 65,067 15,285
Refernce Ave Length (bp) 3,117 1,370 1,475 1,817
Mapping
Mapped Transcripts # 680 162 144 304
Mapped Ave Length (bp) 957 759 773 818
Percentage Mapped 1.99 0.47 0.42 0.89
BlastN
Transcript hit (E-value = 0) 135 (126)* 17 (17) 15 (15) 38 (38)
Transcript hit (E-value < =10-6) 5,386 (3,886) 2,767 (2,090) 2,184 (1,712) 3,749 (2,818)
Transcript hit (E-value < =10-3) 14,106 (8,111) 8,559 (4,797) 4,855 (3,323) 10,869 (6,098)
BlastX
Transcript hit (E-value = 0) 972 (876) 492 (466) 942 (849) 633 (591)
Transcript hit (E-value < =10-6) 14,784 (7,974) 10,948 (7,355) 13,615 (7,053) 10,646 (7,266)
Transcript hit (E-value < =10-3) 19,992 (9,735) 14,953 (8,945) 17,960 (8232) 12,956 (8181)
  1. *The number before and within brackets mean: the number of C. moewusii transcripts with Blast hits from reference alga and the number of reference transcripts hit by C. moewusii query transcripts. Cre C. reinhardtii, ChlN C. variabillis N64A, Coc C. subellipsoidea, and Vca V. carteri.