| | | |
Wheat straw
|
Lactose
|
Wheat straw and lactose
|
|---|
| | | | | |
W > L
|
L > W
|
W = L
|
|---|
|
Transcript category
| | |
A
|
B
|
C
|
D
|
E
|
|---|
|
Gene category
| |
FunCat
| | | | | |
|
All genes
| | |
1619
|
288
|
344
|
65
|
804
|
|
unknown genes
| | |
743
|
117
|
98
|
21
|
309
|
|
orphans
| | |
90
|
44
|
18
|
5
|
81
|
|
Metabolism
| |
01
| | | | | |
| |
glycolysis
|
02.01
|
10
| |
1
| |
10
|
| |
PPP
|
02.07
|
1
|
2
| | |
1
|
| |
TCA cycle
|
02.10
|
4
| |
2
| |
5
|
| |
pentose catabolism
|
NN**
|
1
|
1
|
1
| |
2
|
| |
gluconeogenesis
|
NN***
| | |
1
|
5
| |
| |
amino acids
|
01.01
|
17
|
8
|
6
|
3
|
15
|
| |
nucleotide
|
01.03
|
6
| |
1
|
4
| |
| |
fatty acids
|
01.06.01
|
35
|
6
|
6
|
3
|
22
|
| |
phospholipids
|
01.06.03
|
15
| | | |
6
|
| |
secondary metabolism
|
01.20
|
8
|
3
| | | |
|
Transport
| | | | | | | |
| |
MFS
|
20.01.03
|
28
|
7
|
28
|
3
|
46
|
| |
nitrogenous compounds
|
20.01.07, 20.01.09
|
4
|
5
|
2
|
3
|
8
|
| |
ions
|
20.01.01
|
6
|
1
|
1
| |
5
|
| |
ABC transporters
|
20.03.25
|
4
|
2
| |
1
|
4
|
| |
mitochondrial transport
|
20.09.04
| |
1
| | |
1
|
| |
aquaporins
|
20.03.01
| | |
1
| |
4
|
| |
iron transport and reduction
|
20.01.01.01
|
6
| |
6
| |
1
|
|
Transcription
| | | | | | | |
| |
transcription factors
|
11.02.03.04
|
98
|
16
|
18
|
3
|
57
|
| |
DNA
|
10.01
|
76
| |
4
| |
17
|
|
Cell cycle
| |
10.03
|
13
|
2
|
2
|
1
|
9
|
|
Translation
| |
12.04
|
7
|
1
|
1
| |
1
|
|
Secretion
| |
20.09.16
|
35
|
1
|
1
| |
1
|
|
Signal transduction
| | | | | | | |
| |
G-protein signalling
|
30.01.05.05
|
6
|
1
|
4
|
3
|
9
|
| |
protein kinases/phosphatases
|
30.01.05
|
27
|
1
|
1
| |
3
|
|
Extracellular products
| | | | | | | |
| |
SSCPs
|
NN****
|
39
|
6
|
12
|
1
|
18
|
| |
glycosyl transferases
|
14.07.02
|
5
|
1
|
2
| |
1
|
|
Hydrolytic enzymes
| |
01.25.01
| | | | | |
| |
CAZys
| |
40
|
7
|
54
|
4
|
27
|
| |
proteases
| |
26
|
6
|
8
| |
8
|
| |
lipases
| |
11
|
2
|
3
|
1
|
7
|
| |
nucleases
| |
9
| |
2
|
1
| |
| |
amidases and nitrilases
| |
8
|
2
|
2
| |
4
|
|
Oxidative enzymes
| |
32.07
| | | | | |
| |
cytochrome P450 monooxygenases
| |
11
|
1
|
5
| |
12
|
| |
FAD-dependent monooxygenases
| |
4
| |
5
| |
2
|
| |
dioxygenases
| |
4
|
2
|
1
| |
4
|
| |
multicopper oxidases
| |
3
| |
4
| |
3
|
| |
peroxide/superoxide metabolism
| |
7
| |
1
|
1
|
4
|
- *Only genes that are at least 2-fold upregulated with respect to glucose (p < 0.05) are considered.
- **Not noted in FunCat; refers to enzymes involved in the fungal pentose catabolic pathway.
- ***FunCat combined gluconeogenesis and glycolysis; here we list genes specific only for gluconeogenesis (and which were consequently left out from glycolysis).
- ****Small secreted, cysteine-rich proteins; not listed in FunCat.
