Table 1 Structural features of consensus sequences of copia -type retrotransposons in jatropha
Lineage | Family | Total length (bp) | LTR length (bp) | GAG-POL (aa) | PBS* | PPT** |
|---|---|---|---|---|---|---|
I | Jc1 | 5398 | 510 | 1339 | agTGGTATCAGAGCC | AGGGGGAGAtt |
I | Jc2 | 5493 | 697 | 1326 | acTGGTATCAGAGCC | GGGAGGGGGAGAAt |
I | Jc3 | 5387 | 523 | 1314 | agTGGTATCAGAGCC | AGGGGGAGAtt |
I | Jc4 | 5254 | 440 | 1299 | acTGGTATCAGAGCC | AAGtGGGAGAt |
II | Jc5 | 6217 | 474 | 1370 | tgTGGTATCAGAGCC | AAGTGGGAGAt |
II | Jc6 | 7712 | 959 | 1428 | atTGGTATCAGAGCC | AAGtAGAGAAtGGA |
II | Jc7 | 6652 | 447 | 1358 | agTGGTATCAGAGCC | AAGtGGGAGAt |
III | Jc8 | 4984 | 210 | 1528 | TGGTATCAGAGCt | GAGGGGGAG |
III | Jc9 | 5018 | 161 | 1398 | TGGTATCAGAGCC | GAGGGGGAG |