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Table 1 Structural features of consensus sequences of copia -type retrotransposons in jatropha

From: Structural characterization of copia-type retrotransposons leads to insights into the marker development in a biofuel crop, Jatropha curcasL.

Lineage Family Total length (bp) LTR length (bp) GAG-POL (aa) PBS* PPT**
I Jc1 5398 510 1339 agTGGTATCAGAGCC AGGGGGAGAtt
I Jc2 5493 697 1326 acTGGTATCAGAGCC GGGAGGGGGAGAAt
I Jc3 5387 523 1314 agTGGTATCAGAGCC AGGGGGAGAtt
I Jc4 5254 440 1299 acTGGTATCAGAGCC AAGtGGGAGAt
II Jc5 6217 474 1370 tgTGGTATCAGAGCC AAGTGGGAGAt
II Jc6 7712 959 1428 atTGGTATCAGAGCC AAGtAGAGAAtGGA
II Jc7 6652 447 1358 agTGGTATCAGAGCC AAGtGGGAGAt
III Jc8 4984 210 1528 TGGTATCAGAGCt GAGGGGGAG
III Jc9 5018 161 1398 TGGTATCAGAGCC GAGGGGGAG
  1. * Sequences complementary to the tRNAMet sequence are shown in the upper case.
  2. ** Purine nucleotides were shown in the upper case.