Table 2 Subset of relative expression values for cellulosome-related genes
Gene locus | Function | Populus12Â hours (rank percentile) | Populus37Â hours (rank percentile) | Switchgrass 12Â hours (rank percentile) | Switchgrass 37Â hours (rank percentile) | ||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Array | RNA-seq (KDMM) | Array | RNA-seq (KDMM) | Array | RNA-seq (KDMM) | Array | RNA-seq (KDMM) |
Cthe_0109 | Dockerin | 78.7 | 89.3 | 73.0 | 85.8 | 69.2 | 82.4 | 66.2 | 81.1 |
Cthe_0239 | Dockerin | 79.4 | 93.4 | 81.7 | 96.4 | 68.4 | 88.1 | 67.9 | 87.9 |
Cthe_0271 | CBM_3 | 99.1 | 88.3 | 99.8 | 92.3 | 99.8 | 83.8 | 99.9 | 89.2 |
Cthe_0392 | Transport | 100 | 98.5 | 99.8 | 95.3 | 99.9 | 97.5 | 99.7 | 96.8 |
Cthe_0624 | Dockerin | 81.8 | 96.1 | 78.2 | 96.5 | 91.5 | 98.6 | 65.8 | 93.7 |
Cthe_0736 | Scaffoldin | 59.1 | 86.7 | 53.6 | 85.0 | 72.8 | 96.6 | 42.4 | 75.2 |
Cthe_1890 | Dockerin | 57.6 | 71.9 | 71.7 | 83.4 | 32.1 | 44.8 | 77.3 | 89.7 |
Cthe_1963 | GH 10 | 86.7 | 93.1 | 93.9 | 98.1 | 91.0 | 97.7 | 92.7 | 97.5 |
Cthe_2089 | GH 48/CelS | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.9 | 99.7 | 99.8 |
Cthe_2271 | Dockerin | 66.5 | 45.4 | 13.9 | 9.3 | 18.3 | 15.6 | 30.9 | 16.1 |
Cthe_2949 | Dockerin | 22.1 | 28.1 | 24.3 | 27.9 | 16.9 | 22.9 | 18.5 | 24.9 |
Cthe_3077 | CipA | 99.6 | 100 | 99.3 | 100 | 99.5 | 100 | 98.5 | 100 |