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Table 9 Selected pathogenic reference strains for genome mappings of metagenomic sequences and their features

From: Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms

Species Accession number Genome size [Mbp] Sequence status Disease
Clostridium botulinum A str. ATCC 3502 [GenBank:NC_009495] 3.90 Finished Botulism
Clostridium botulinum B1 Okra [GenBank:NC_010516] 4.10 Finished Botulism
Clostridium botulinum C Stockholm [GenBank:NZ_AESA00000000] 2.77 draft genome Botulism
Clostridium botulinum D 1873 [GenBank:NZ_ACSJ00000000] 2.40 draft genome Botulism
Clostridium botulinum E1 BoNT E Beluga [GenBank:NZ_ACSC00000000] 4.00 draft genome Botulism
Clostridium botulinum F Langeland [GenBank:NC_009699] 4.01 Finished Botulism
Clostridium butyricum E4 BoNT E BL5262 [GenBank:NZ_ACOM00000000] 4.76 draft genome Botulism
Clostridium difficile 630 [GenBank:NC_009089] 4.30 Finished Diarrhea and colitis
Clostridium perfringens ATCC 13124 [GenBank:NC_008261] 3.26 Finished Gas gangrene
Clostridium tetani E88 [GenBank:NC_004557] 2.87 Finished Tetanus
Escherichia coli O104:H4 str. GOS1 [GenBank:AFWO00000000] 5.31 draft genome Hemolytic-uremic syndrome
Escherichia coli O104:H4 str. GOS2 [GenBank:AFWP00000000] 5.31 draft genome Hemolytic-uremic syndrome
Escherichia coli O157:H7 str. EC4115 [GenBank:NC_011353] 5,70 Finished Hemorrhagic colitis
Escherichia coli O55:H7 str. CB9615 [GenBank:NC_013941] 5.45 Finished Gastroenteritis
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 [GenBank:NC_011294] 4.69 Finished Salmonellosis
Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 [GenBank:NC_016854] 4.88 Finished Gastroenteritis
Salmonella enterica serovar Paratyphi C RKS4594 [GenBank:NC_012125] 4.89 Finished Paratyphoid fever
Salmonella enterica serovar Typhi Ty2 [GenBank:NC_004631] 4.79 Finished Typhoid fever
Shigella boydii Sb227 [GenBank:NC_007613] 4.65 Finished Dysentery
Shigella dysenteriae Sd197 [GenBank:NC_007606] 4.56 Finished Dysentery
Shigella flexneri 2a str. 301 [GenBank:NC_004337] 4.83 Finished Dysentery
Shigella sonnei Ss046 [GenBank:NC_007384] 5.06 Finished Dysentery
Streptococcus agalactiae NEM316 [GenBank:NC_004368] 2.21 Finished Neonatal GBS meningitis
Streptococcus pyogenes MGAS5005 [GenBank:NC_007297] 1.84 Finished Wide range of infections
Vibrio cholerae M66 [GenBank:NC_012578] 3.94 Finished Cholera
Vibrio fischeri ES114 [GenBank:NC_006840] [GenBank:NC_006841] 4.27 Finished -