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Table 1 MIPS functional classification of genes differentially regulated by both C9 and C10

From: Transcriptome response to alkane biofuels in Saccharomyces cerevisiae: identification of efflux pumps involved in alkane tolerance

Functional category k f
Up-regulated
fatty acid metabolism 5 24
phospholipid metabolism 7 68
oxidative stress response 6 55
tetracyclic and pentacyclic triterpenes 5 36
cellular import 7 90
lipid/fatty acid transport 5 44
ABC transporters 4 28
lipid, fatty acid and isoprenoid metabolism 8 133
degradation of glutamate 2 4
metabolism of amino acid-derived secondary products 2 4
NAD/NADP binding 4 36
C-compound and carbohydrate metabolism 10 223
heat shock response 3 20
chemical agent resistance 3 22
S-adenosyl-methionine-homocysteine cycle 2 7
pH stress response 2 8
oxidation of fatty acids 2 9
transport ATPases 4 53
Down-regulated
biosynthesis of thiamine 6 110
transport facilities 5 87
degradation of lysine 2 5
degradation of glycine 2 6
transport routes 2 11
metabolism of thiamine 3 43
tetrahydrofolate-dependent C-1-transfer 2 13
  1. Note: functional classification was generated by the online program FunSpec (http://funspec.med.utoronto.ca/) with p-value cut-off of 0.01. k, number of genes from the input (105 up-regulated genes, and 42 down-regulated genes) in the given category, f, number of genes total in the given category.