Table 2 Gene ontology analysis of transcriptional responses of CTY and INVSc1 hosts to xylose metabolism

GO:0000902

cell morphogenesis

FKS1

GO:0005975

carbohydrate metabolic process

ERR1, FKS1, GPH1, GPM1, IMA1, MAL12, PYK2, SUC2, CIT1

ALG13, ALG2, CIT1, CWH41, GPH1, KRE6, PYC1, STT3

GO:0006091

generation of precursor metabolites and energy

ATF1, ERR1, FRE3, GPH1, GPM1, PYK2, CIT1

CIT1, GPH1, OLE1

GO:0006457

protein folding

CPR7

GO:0006486

protein glycosylation

ALG2, CWH41, STT3

GO:0006520

cellular amino acid metabolic process

GDH1, CIT1

ASN1, CIT1, GDH3, LEU1, MET13, MET16, TRP5, YGR012W

GO:0006629

lipid metabolic process

MCR1, YPC1

ALG13, ALG2, ECT1, ERG26, ERG4, MET13, MET16, OLE1, POX1

GO:0006811

ion transport

FRE3

GO:0006873

cellular ion homeostasis

FRE3

GO:0006897

endocytosis

FKS1

GO:0006979

response to oxidative stress

AHP1, MCR1

GO:0008033

tRNA processing

PUS2

GO:0008380

RNA splicing

MNE1

GO:0009311

oligosaccharide metabolic process

IMA1, MAL12, SUC2

ALG2, CWH41

GO:0009451

RNA modification

PUS2

GO:0018193

peptidyl-amino acid modification

CPR7

GO:0023052

signaling

PDE2

GO:0042221

response to chemical stimulus

AHP1, MCR1

MNL1

GO:0045333

cellular respiration

CIT1

CIT1

GO:0051049

regulation of transport

FKS1

GO:0051603

proteolysis involved in cellular protein catabolic process

ATE1, MNL1

GO:0051604

protein maturation

KEX1

GO:0051186

cofactor metabolic process

ACH1, ALD4, FDH1, CIT1

CIT1, HEM2, MET13, NMA2, NPY1, PNC1, PYC1

GO:0055086

nucleobase-containing small molecule metabolic process

ALD4, FDH1

NMA2, NPY1, PNC1, PYC1

GO:0071554

cell wall organization or biogenesis

CWH41, KRE6

Un-identified, up-regulated genes*

POT1, SDH1

BAT1

Down-regulated

GO:0005975

carbohydrate metabolic process

CIT3

RPE1

GO:0006091

generation of precursor metabolites and energy

CIT3

GO:0006470

protein dephosphorylation

YMR1

GO:0006520

cellular amino acid metabolic process

GSH2

CPA2, URA8

URA2

GO:0006605

protein targeting

ACC1

GO:0006629

lipid metabolic process

ACC1, ARE2, CIT3, LRO1

URA8, YJR107W, YMR1

LCB3

GO:0006873

cellular ion homeostasis

SOD1

GO:0006979

response to oxidative stress

SOD1

GO:0006997

nucleus organization

ACC1

GO:0023052

signaling

LCB3

GO:0042221

response to chemical stimulus

SOD1

GO:0045333

cellular respiration

CIT3

GO:0051169

nuclear transport

ACC1

GO:0051186

cofactor metabolic process

ACC1, CIT3

RPE1

GO:0055086

nucleobase-containing small molecule metabolic process

ACC1, URK1

ADO1, URA8

RPE1, URA2

GO:0071554

cell wall organization or biogenesis

SOD1

Un-identified, down-regulated genes*

NIT2

Summary

Up-regulated

22

30

0

0

Down-regulated

5

1

6

4