Table 3 Gene ontology analysis of transcriptional responses in host dependence

GO:0000902

cell morphogenesis

FKS1

GO:0005975

carbohydrate metabolic process

ALG8, FKS1, GPH1, IMA1, IMA3, KRE6, MAL12, SUC2

CDC19, GPH1, IMA3, KRE6, MAL32, SUC2

GO:0006091

generation of precursor metabolites and energy

CYT1, GPH1

ACS1, CDC19, GPH1

GO:0006325

chromatin organization

ACS1

GO:0006470

protein dephosphorylation

YMR1

GO:0006486

protein glycosylation

ALG8

GO:0006520

cellular amino acid metabolic process

ASN1, CPA2, PDC6, URA8, YIL168W

ASN1, DYS1, GCV3, GDH2, GDH3, MET16, YIL168W

GO:0006629

lipid metabolic process

ALG8, URA8, YJR107W, YMR1

ERG7, FOX2, MET16

GO:0006766

vitamin metabolic process

BIO2

GO:0006873

cellular ion homeostasis

SOD1

GO:0006897

endocytosis

FKS1

GO:0006979

response to oxidative stress

CTT1, SOD1

GO:0007005

mitochondrion organization

PPE1

GO:0009311

oligosaccharide metabolic process

ALG8, IMA1, IMA3, MAL12, SUC2

IMA3, MAL32, SUC2

GO:0016570

histone modification

ACS1

GO:0018193

peptidyl-amino acid modification

ACS1, DYS1

GO:0032543

mitochondrial translation

PPE1

GO:0042221

response to chemical stimulus

CTT1, SOD1

MNL1

GO:0043543

protein acylation

ACS1

GO:0045333

cellular respiration

CYT1

GO:0051049

regulation of transport

FKS1

GO:0051186

cofactor metabolic process

ACH1, BIO2

ACS1, QNS1

GO:0051603

proteolysis involved in cellular protein catabolic process

MNL1

GO:0055086

nucleobase-containing small molecule metabolic process

ADO1, URA8

QNS1

GO:0070271

protein complex biogenesis

CYC3

GO:0071554

cell wall organization or biogenesis

KRE6, SOD1

KRE6

Un-identified, up-regulated genes*

NIT1 POT1

BDH1 NIT1 POT1

Down-regulated

GO:0000746

conjugation

CHS5

GO:0000910

cytokinesis

CHS5

GO:0005975

carbohydrate metabolic process

CDC19

ALG13, ALG2, CWH41, DOG1, DOG2, FBA1, HXK1, INM1, PYC1, STT3

CHS5, DOG1, DOG2, GAL7, INM1, PGI1, RBK1

GO:0006091

generation of precursor metabolites and energy

ACS1, CDC19

COX6, FBA1, HXK1, OLE1

COX6, PGI1, TRX3

GO:0006281

DNA repair

YNK1

GO:0006325

chromatin organization

ACS1

GO:0006457

protein folding

CPR4

GO:0006486

protein glycosylation

ALG2, CWH41, STT3

GO:0006520

cellular amino acid metabolic process

GCV3, GDH3

CAR2, GLN1, IRC7, LEU1, MET13, PUT2, THR1, TRP5, YGR012W

ALT2, LYS9, PUT2, THR1, THR4, YGR012W

GO:0006629

lipid metabolic process

ALG13, ALG2, ECT1, ERG26, ERG4, INM1, IRC7, MET13, NCP1, OLE1, THR1

ARE1, ATG15, ECT1, INM1, MVD1, NCP1, THR1, YAT1

GO:0006974

response to DNA damage stimulus

YNK1

GO:0006979

response to oxidative stress

TRX3

GO:0008033

tRNA processing

PUS2

GO:0008643

carbohydrate transport

HXK1

GO:0009311

oligosaccharide metabolic process

ALG2, CWH41

GO:0009451

RNA modification

PUS2

GO:0010324

membrane invagination

ATG15

GO:0016570

histone modification

ACS1

GO:0018193

peptidyl-amino acid modification

ACS1

CPR4

GO:0042221

response to chemical stimulus

TRX3

GO:0043543

protein acylation

ACS1

GO:0043934

sporulation

CHS5

GO:0045333

cellular respiration

COX6

COX6

GO:0048193

Golgi vesicle transport

CHS5

GO:0051186

cofactor metabolic process

ACS1

HEM2, MET13, NMA2, NPY1, PNC1, PYC1

MVD1, NMA1, NMA2, PGI1

GO:0051603

proteolysis involved in cellular protein catabolic process

ATE1

GO:0051604

protein maturation

ATG15

GO:0055086

nucleobase-containing small molecule metabolic process

IMD2

IMD2, IMD3, NMA2, NPY1, PNC1, PRS2, PYC1, YNK1

IMD2, NMA1, NMA2, PGI1

GO:0070271

protein complex biogenesis

CYC3

GO:0071554

cell wall organization or biogenesis

CWH41, PRS2

CHS5

Un-identified, down-regulated genes*

BDH1 AAD15

AAD15

PHO11 AAD15 FEN1

Summary

Down-regulated

8

36

29

Up-regulated

0

23

24