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Table 1 Predicted cellulase enzymes identified in the switchgrass-adapted metagenome

From: Discovery and characterization of ionic liquid-tolerant thermophilic cellulases from a switchgrass-adapted microbial community

Gene ID IMG gene ID GH family Predicted function Max identity (%) Genbank accession number Top Blast-hit organism Metagenome bin*
J01 2061974227 3 β-glucosidase 42 ZP_06970881.1 Ktedonobacter racemifer DSM 44963 Paenibacillus
J02 2061976655 3 β-glucosidase 97 YP_003321925.1 Thermobaculum terrenum Thermobaculum
J03 2061976732 3 β-glucosidase 96 YP_003322827.1 Thermobaculum terrenum Thermobaculum
J04 2061977694 1 β-glucosidase 62 ZP_10205923.1 Rhodanobacter thiooxydans LCS2 Gemmatimonadetes
J05 2061979262 3 β-glucosidase 44 YP_002760449.1 Gemmatimonas aurantiaca T-27 Gemmatimonadetes
J06 2061979786 1 β-glucosidase 61 ZP_08918778.1 Thermobacillus composti KWC4 Paenibacillus
J07 2061980390 1 β-glucosidase 66 NP_242789.1 Bacillus halodurans C-125 Not binned
J08 2062002762 1 β-glucosidase 99 YP_003323667.1 Thermobaculum terrenum ATCC BAA-798 Not binned
J09 2062002762 1 β-glucosidase 98 YP_003323667.1 Thermobaculum terrenum ATCC BAA-798 Not binned
J10 2062002993 3 β-glucosidase 77 ZP_09004353.1 Paenibacillus lactis 154 Not binned
J11 2062005533 3 β-glucosidase 42 ZP_06970881.1 Ktedonobacter racemifer DSM 44963 Not binned
J12 2062006736 3 β-glucosidase 94 YP_003291338.1 Rhodothermus marinus DSM 4252 Rhodothermus1
J13 2062007625 1 β-glucosidase 93 YP_003318753.1 Sphaerobacter thermophilus DSM 20745 Sphaerobacter
J14 2062008681 3 β-glucosidase 97 YP_003324065.1 Thermobaculum terrenum ATCC BAA-798 Sphaerobacter
J15 2062012385 3 β-glucosidase 75 YP_823953.1 Candidatus Solibacter usitatus Ellin6076 Not binned
J16 2062018481 3 β-glucosidase 100 YP_004824792.1 Rhodothermus marinus SG0.5JP17-172 Rhodothermus1
J17 2062019328 3 β-glucosidase 71 ZP_08918857.1 Thermobacillus composti KWC4 Paenibacillus
J18 2062019735 1 β-glucosidase 99 AAN05441.1 Thermus sp. IB-21 Thermus
J19 2062026722 1 β-glucosidase 72 YP_002522957.1 Thermomicrobium roseum DSM 5159 Thermomicrobium
J21 2061975668 9 Endoglucanase 54 YP_002759529.1 Gemmatimonas aurantiaca T-27 Gemmatimonadetes
J22 2061976479 8 Endoglucanase 72 BAF49077.1 Paenibacillus sp. W-61 Paenibacillus
J23 2061977143 5 Endoglucanase 32 ZP_09216417.1 Gordonia amarae NBRC 15530 Sphaerobacter2
J24 2061979932 9 Endoglucanase 54 ACJ68032.1 Paenibacillus provencensis Paenibacillus
J25 2061986269 12 Endoglucanase 98 YP_004824941.1 Rhodothermus marinus SG0.5JP17-172 Rhodothermus2
J26 2061990001 12 Endoglucanase 100 YP_004824941.1 Rhodothermus marinus SG0.5JP17-172 Not binned
J27 2061990054 5 Endoglucanase 35 ZP_09309733.1 Rhodococcus pyridinivorans AK37 Sphaerobacter2
J28 2061994288 5 Endoglucanase 98 YP_003323917.1 Thermobaculum terrenum ATCC BAA-798 Sphaerobacter
J29 2062006179 5 Endoglucanase 52 BAJ22272.1 Paenibacillus sp. KSM-N546 Paenibacillus
J30 2062016312 9 Endoglucanase 54 ZP_08919343.1 Thermobacillus composti KWC4 Not binned
J31 2062017860 5 Endoglucanase 57 ZP_08873206.1 Verminephrobacter aporrectodeae Not binned
J32 2062025020 5 Endoglucanase 96 YP_003320228.1 Sphaerobacter thermophilus DSM 20745 Not binned
J33 2062027867 8 Endoglucanase 72 ZP_04851456.1 Paenibacillus sp. oral taxon 786 str. D14 Not binned
J34 2062029826 6 Endoglucanase 37 ZP_06416445.1 Frankia sp. EUN1f Thermobaculum
J35 2062032441 5 Endoglucanase 35 ZP_08873206.1 Verminephrobacter aporrectodeae Not Binned
J36 2062035244 5 Endoglucanase 100 YP_004823815.1 Rhodothermus marinus SG0.5JP17-172 Rhodothermus1
J38 2062019306 3 Cellobiohydrolase 57 ZP_08918880.1 Thermobacillus composti KWC4 Paenibacillus
J39 2062019306 3 Cellobiohydrolase 76 ZP_08918880.1 Thermobacillus composti KWC4 Paenibacillus
  1. *Metagenomic bin indicates the predicted source organism. Refer to D’Haeseleer et al. for details [19]. Gene sequence and annotation can be found at the Joint Genome Institute’s img/m website (http://img.jgi.doe.gov/cgi-bin/m/main.cgi) under the “Find Genes” tab using the IMG/M gene ID in the table. J20 and J37 were not included in this study.
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Biotechnology for Biofuels

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