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Table 2 Assembly statistics for strain DSM 10061

From: Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia

 

Contigs (number)

Largest contig (bp)

Contig N50 (bp)

Genome size (Mb)

Scaffolds

Largest scaffold (bp)

Scaffold N50 (bp)

Assembler

454/Ion Torrent *

100

436,795

115,901

4.32

   

Newbler 2.6

Illumina only

57

460,940

255,482

4.3

53

769,812

328,660

Velvet 1.2

454 only

32

134,546

330,116

4.3

13

1,137,876

898,466

Newbler 2.8

Illumina/ 454 Hybrid

22

1,137,625

687,076

4.3

13

1,137,625

899,926

Newbler 2.8

PacBio

1

4,352,205

4,352,267

4.3

1

4,352,267

4,352,267

SMRT 2.0

  1. *Previously published as a 4.5-Mb draft genome [26], but present [GenBank: ASZX00000000.1] as 4,323,309 bp.