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Table 1 Differentially expressed genes, predicted to encode proteins involved in carbon metabolism, between 24 h fructose and 6 h, 12 h and 24 h xylose in A. nidulans

From: Functional characterization of a xylose transporter in Aspergillus nidulans

Function ID Description    
    6 h 12 h 24 h
    log2Cy5/Cy3 log2Cy5/Cy3 log2Cy5/Cy3
C1 category      
xyrA AN0423 Putative D-xylose reductase 7.75 7.36 7.17
acuD AN5634 Isocitrate lyase 1.90 1.68 2.24
gfdB AN6792 Putative NAD + dependent glycerol 3-phosphate dehydrogenase 1.30 1.93 1.32
maeA AN6168 Putative malate dehydrogenase 2.05 2.12 2.19
AN0443 AN0443 Alcohol dehydrogenase 1.16 0.65 0.99
AN1274 AN1274 Alditol:NADP+ oxidoreductase; role in arabinose and xylose catabolic process 3.98 3.11 2.81
AN2099 AN2099 alternative oxidase AoxA 2.03 1.36 2.21
AN2951 AN2951 Putative UDP-glucose 4-epimerase; role in galactose and galactitol metabolism 1.07 1.06 2.01
AN3432 AN3432 Putative epimerase with a predicted role in carbohydrate metabolism 3.84 3.43 3.57
AN7343 AN7343 Amylase cluster transcriptional regulator AmyR 1.21 0.80 1.41
AN8790 AN8790 Putative xylulokinase 2.28 1.82 1.51
AN9031 AN9031 Fumarylacetoacetate hydrolase 1.25 1.04 1.34
AN9064 AN9064 Xylitol dehydrogenase 3.49 2.68 2.37
AN9152 AN9152 NAD dependent epimerase/dehydratase family protein 1.50 0.96 2.14
AN9457 AN9457 L-galactose dehydrogenase 6.05 4.58 4.86
C2 category      
ladC AN8552 L-arabinitol 4-dehydrogenase (PPP) 0.32 0.15 0.17
orlA AN3441 Trehalose 6-phosphate phosphatase 0.68 0.39 0.37
ugeA AN4727 UDP-glucose 4-epimerase 0.78 1.07 0.54
AN10783 AN10783 6-phosphogluconate dehydrogenase family protein 0.99 1.15 0.62
AN2470 AN2470 Alcohol dehydrogenase 0.79 0.66 1.13
AN7588 AN7588 Putative ribulose-phosphate 3-epimerase (PPP) 0.79 0.39 0.58
AN8707 AN8707 Putative fumarate dehydratase with a predicted role in the TCA cycle 0.60 0.46 0.13
AN9347 AN9347 Alcohol dehydrogenase 0.76 0.60 1.02
C3 category      
acoA AN5525 Putative aconitate hydratase with a predicted role in the TCA cycle -0.62 -0.66 -0.55
alcS AN8981 Protein with homology to GPR1/FUN34/YaaH family members -2.80 -2.73 -2.85
carC AN8793 Putative succinate dehydrogenase (ubiquinone) -0.40 -0.31 -0.52
galF AN9148 Putative UTP-glucose-1-phosphate uridylyltransferase -0.48 -0.20 -0.54
gpgA AN2742 Gamma subunit of a heterotrimeric G protein composed of FadA -0.34 -0.36 -0.42
gprC AN3765 Putative G-protein coupled receptor -1.59 -2.83 -3.14
gsdA AN2981 Putative glucose 6-phosphate 1-dehydrogenase (PPP) -0.49 -0.55 -0.88
idpA AN2999 Isocitrate dehydrogenase (NADP+) with a predicted role in the TCA cycle -0.96 -1.10 -0.91
mcsA AN6650 Methylcitrate synthase with a predicted role in the TCA cycle -1.31 -1.05 -2.05
mdhA AN6717 Putative malate dehydrogenase with a predicted role in the TCA cycle -0.48 -0.41 -0.51
pycA AN4462 Putative pyruvate carboxylase or glutathione synthase -0.34 -0.20 -0.66
sfaD AN0081 Beta subunit of a heterotrimeric G protein composed of FadA -0.40 -0.52 -0.61
tpiA AN6900 Putative triose-phosphate isomerase with a role in gluconeogenesis and glycolysis -0.71 -0.74 -0.66
vmaB AN6232 Putative F1F0-ATPase complex subunit with a predicted role in energy metabolism -0.83 -0.86 -0.90
AN0252 AN0252 Putative F1F0-ATPase complex subunit with a predicted role in energy metabolism -0.69 -0.54 -0.70
AN0567 AN0567 Putative alcohol oxidase with a predicted role in glycerol metabolism -2.13 -1.77 -2.73
AN0896 AN0896 Putative succinate dehydrogenase -0.78 -0.64 -0.66
AN1534 AN1534 Putative F1F0-ATPase complex subunit with a predicted role in energy metabolism -0.53 -0.52 -0.44
AN2208 AN2208 Putative galactose 1-dehydrogenase -0.65 -0.85 -0.97
AN2315 AN2315 Putative F1F0-ATPase complex subunit with a predicted role in energy metabolism -0.47 -0.43 -0.57
AN2316 AN2316 Putative cytochrome c oxidase subunit with a predicted role in energy metabolism -0.61 -0.52 -0.52
AN2815 AN2815 Putative mannitol 2-dehydrogenase with a predicted role in mannose/mannitol -0.62 -0.91 -0.45
AN3088 AN3088 Putative F1F0-ATPase complex subunit with a predicted role in energy metabolism -0.39 -0.40 -0.27
AN4525 AN4525 Putative cytochrome c oxidase subunit with a predicted role in energy metabolism -0.68 -0.74 -0.55
AN5629 AN5629 Putative NADH dehydrogenase (ubiquinone) with a predicted role in energy metabolism -0.45 -0.52 -0.73
AN5703 AN5703 Electron-transferring-flavoprotein dehydrogenase with a predicted role in energy metabolism -0.44 -0.50 -0.56
AN5907 AN5907 Putative ribose-5-phosphate isomerase -0.96 -1.00 -1.13
AN6077 AN6077 Putative NADH dehydrogenase (ubiquinone) -0.52 -0.56 -0.53
AN6287 AN6287 F1F0-ATPase complex subunit with a predicted role in energy metabolism -0.59 -0.59 -0.59
AN8118 AN8118 Putative cytochrome c oxidase subunit with a predicted role in energy metabolism -0.54 -0.57 -0.36
AN8273 AN8273 Putative ubiquinol-cytochrome-c reductase -0.69 -0.87 -0.73
AN8819 AN8819 Putative dehydrogenase with a predicted role in carbohydrate metabolism -0.90 -1.03 -1.09