Table 1 Differentially expressed genes, predicted to encode proteins involved in carbon metabolism, between 24 h fructose and 6 h, 12 h and 24 h xylose in A. nidulans
From: Functional characterization of a xylose transporter in Aspergillus nidulans
Function | ID | Description | |||
|---|---|---|---|---|---|
6 h | 12 h | 24 h | |||
log2Cy5/Cy3 | log2Cy5/Cy3 | log2Cy5/Cy3 | |||
C1 category | |||||
xyrA | AN0423 | Putative D-xylose reductase | 7.75 | 7.36 | 7.17 |
acuD | AN5634 | Isocitrate lyase | 1.90 | 1.68 | 2.24 |
gfdB | AN6792 | Putative NAD + dependent glycerol 3-phosphate dehydrogenase | 1.30 | 1.93 | 1.32 |
maeA | AN6168 | Putative malate dehydrogenase | 2.05 | 2.12 | 2.19 |
AN0443 | AN0443 | Alcohol dehydrogenase | 1.16 | 0.65 | 0.99 |
AN1274 | AN1274 | Alditol:NADP+ oxidoreductase; role in arabinose and xylose catabolic process | 3.98 | 3.11 | 2.81 |
AN2099 | AN2099 | alternative oxidase AoxA | 2.03 | 1.36 | 2.21 |
AN2951 | AN2951 | Putative UDP-glucose 4-epimerase; role in galactose and galactitol metabolism | 1.07 | 1.06 | 2.01 |
AN3432 | AN3432 | Putative epimerase with a predicted role in carbohydrate metabolism | 3.84 | 3.43 | 3.57 |
AN7343 | AN7343 | Amylase cluster transcriptional regulator AmyR | 1.21 | 0.80 | 1.41 |
AN8790 | AN8790 | Putative xylulokinase | 2.28 | 1.82 | 1.51 |
AN9031 | AN9031 | Fumarylacetoacetate hydrolase | 1.25 | 1.04 | 1.34 |
AN9064 | AN9064 | Xylitol dehydrogenase | 3.49 | 2.68 | 2.37 |
AN9152 | AN9152 | NAD dependent epimerase/dehydratase family protein | 1.50 | 0.96 | 2.14 |
AN9457 | AN9457 | L-galactose dehydrogenase | 6.05 | 4.58 | 4.86 |
C2 category | |||||
ladC | AN8552 | L-arabinitol 4-dehydrogenase (PPP) | 0.32 | 0.15 | 0.17 |
orlA | AN3441 | Trehalose 6-phosphate phosphatase | 0.68 | 0.39 | 0.37 |
ugeA | AN4727 | UDP-glucose 4-epimerase | 0.78 | 1.07 | 0.54 |
AN10783 | AN10783 | 6-phosphogluconate dehydrogenase family protein | 0.99 | 1.15 | 0.62 |
AN2470 | AN2470 | Alcohol dehydrogenase | 0.79 | 0.66 | 1.13 |
AN7588 | AN7588 | Putative ribulose-phosphate 3-epimerase (PPP) | 0.79 | 0.39 | 0.58 |
AN8707 | AN8707 | Putative fumarate dehydratase with a predicted role in the TCA cycle | 0.60 | 0.46 | 0.13 |
AN9347 | AN9347 | Alcohol dehydrogenase | 0.76 | 0.60 | 1.02 |
C3 category | |||||
acoA | AN5525 | Putative aconitate hydratase with a predicted role in the TCA cycle | -0.62 | -0.66 | -0.55 |
alcS | AN8981 | Protein with homology to GPR1/FUN34/YaaH family members | -2.80 | -2.73 | -2.85 |
carC | AN8793 | Putative succinate dehydrogenase (ubiquinone) | -0.40 | -0.31 | -0.52 |
galF | AN9148 | Putative UTP-glucose-1-phosphate uridylyltransferase | -0.48 | -0.20 | -0.54 |
gpgA | AN2742 | Gamma subunit of a heterotrimeric G protein composed of FadA | -0.34 | -0.36 | -0.42 |
gprC | AN3765 | Putative G-protein coupled receptor | -1.59 | -2.83 | -3.14 |
gsdA | AN2981 | Putative glucose 6-phosphate 1-dehydrogenase (PPP) | -0.49 | -0.55 | -0.88 |
idpA | AN2999 | Isocitrate dehydrogenase (NADP+) with a predicted role in the TCA cycle | -0.96 | -1.10 | -0.91 |
mcsA | AN6650 | Methylcitrate synthase with a predicted role in the TCA cycle | -1.31 | -1.05 | -2.05 |
mdhA | AN6717 | Putative malate dehydrogenase with a predicted role in the TCA cycle | -0.48 | -0.41 | -0.51 |
pycA | AN4462 | Putative pyruvate carboxylase or glutathione synthase | -0.34 | -0.20 | -0.66 |
sfaD | AN0081 | Beta subunit of a heterotrimeric G protein composed of FadA | -0.40 | -0.52 | -0.61 |
tpiA | AN6900 | Putative triose-phosphate isomerase with a role in gluconeogenesis and glycolysis | -0.71 | -0.74 | -0.66 |
vmaB | AN6232 | Putative F1F0-ATPase complex subunit with a predicted role in energy metabolism | -0.83 | -0.86 | -0.90 |
AN0252 | AN0252 | Putative F1F0-ATPase complex subunit with a predicted role in energy metabolism | -0.69 | -0.54 | -0.70 |
AN0567 | AN0567 | Putative alcohol oxidase with a predicted role in glycerol metabolism | -2.13 | -1.77 | -2.73 |
AN0896 | AN0896 | Putative succinate dehydrogenase | -0.78 | -0.64 | -0.66 |
AN1534 | AN1534 | Putative F1F0-ATPase complex subunit with a predicted role in energy metabolism | -0.53 | -0.52 | -0.44 |
AN2208 | AN2208 | Putative galactose 1-dehydrogenase | -0.65 | -0.85 | -0.97 |
AN2315 | AN2315 | Putative F1F0-ATPase complex subunit with a predicted role in energy metabolism | -0.47 | -0.43 | -0.57 |
AN2316 | AN2316 | Putative cytochrome c oxidase subunit with a predicted role in energy metabolism | -0.61 | -0.52 | -0.52 |
AN2815 | AN2815 | Putative mannitol 2-dehydrogenase with a predicted role in mannose/mannitol | -0.62 | -0.91 | -0.45 |
AN3088 | AN3088 | Putative F1F0-ATPase complex subunit with a predicted role in energy metabolism | -0.39 | -0.40 | -0.27 |
AN4525 | AN4525 | Putative cytochrome c oxidase subunit with a predicted role in energy metabolism | -0.68 | -0.74 | -0.55 |
AN5629 | AN5629 | Putative NADH dehydrogenase (ubiquinone) with a predicted role in energy metabolism | -0.45 | -0.52 | -0.73 |
AN5703 | AN5703 | Electron-transferring-flavoprotein dehydrogenase with a predicted role in energy metabolism | -0.44 | -0.50 | -0.56 |
AN5907 | AN5907 | Putative ribose-5-phosphate isomerase | -0.96 | -1.00 | -1.13 |
AN6077 | AN6077 | Putative NADH dehydrogenase (ubiquinone) | -0.52 | -0.56 | -0.53 |
AN6287 | AN6287 | F1F0-ATPase complex subunit with a predicted role in energy metabolism | -0.59 | -0.59 | -0.59 |
AN8118 | AN8118 | Putative cytochrome c oxidase subunit with a predicted role in energy metabolism | -0.54 | -0.57 | -0.36 |
AN8273 | AN8273 | Putative ubiquinol-cytochrome-c reductase | -0.69 | -0.87 | -0.73 |
AN8819 | AN8819 | Putative dehydrogenase with a predicted role in carbohydrate metabolism | -0.90 | -1.03 | -1.09 |