Table 1 Summary of significantly differentially expressed genes in response to acetate or carbon sources

Gluc_Ac_UP

30

62

3

7

102

148

Acetate regulated genes with glucose as carbon source, Additional file 3: Table S2-2.

Gluc_Ac_DOWN

43

3

0

0

46

Xyl_Ac_UP

18

0

21

8

47

76

Acetate regulated genes with xylose as carbon source, Additional file 3: Table S2-3.

Xyl_Ac_DOWN

26

2

1

0

29

GX_Log_Ac_UP

60

23

1

0

84

154

Acetate regulated genes with mixed glucose and xylose, Additional file 3: Table S2-11.

GX_Log_Ac_DOWN

44

26

0

0

70

Xyl/Gluc_UP

113

113

2

5

233

369

Xylose regulated genes compared to glucose, Additional file 3: Table S2-4.

Xyl/Gluc_DOWN

128

4

4

0

136

Xyl/Gluc_Ac_UP

40

2

0

0

42

112

Xylose regulated genes compared to glucose in the presence of acetate, Additional file 3: Table S2-5.

Xyl/Gluc_Ac_DOWN

35

33

2

0

70

GX/Gluc_UP

28

15

2

0

45

73

Mixed sugar (xylose and glucose) regulated genes compared to glucose, Additional file 3: Table S2-17.

GX/Gluc_DOWN

17

7

4

0

28

GX/Gluc_Ac_UP

67

19

1

0

87

151

Mixed sugar (xylose and glucose) regulated genes compared to glucose only in the presence of acetate, Additional file 3: Table S2-18.

GX/Gluc_Ac_DOWN

33

24

6

1

64