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Table 1 Summary of significantly differentially expressed genes in response to acetate or carbon sources

From: Insights into acetate toxicity in Zymomonas mobilis8b using different substrates

  cGene cIGR pGene pIGR Total SUM Note
Acetate regulated genetic features
Gluc_Ac_UP 30 62 3 7 102 148 Acetate regulated genes with glucose as carbon source, Additional file 3: Table S2-2.
Gluc_Ac_DOWN 43 3 0 0 46
Xyl_Ac_UP 18 0 21 8 47 76 Acetate regulated genes with xylose as carbon source, Additional file 3: Table S2-3.
Xyl_Ac_DOWN 26 2 1 0 29
GX_Log_Ac_UP 60 23 1 0 84 154 Acetate regulated genes with mixed glucose and xylose, Additional file 3: Table S2-11.
GX_Log_Ac_DOWN 44 26 0 0 70
Carbon-source regulated genetic features
Xyl/Gluc_UP 113 113 2 5 233 369 Xylose regulated genes compared to glucose, Additional file 3: Table S2-4.
Xyl/Gluc_DOWN 128 4 4 0 136
Xyl/Gluc_Ac_UP 40 2 0 0 42 112 Xylose regulated genes compared to glucose in the presence of acetate, Additional file 3: Table S2-5.
Xyl/Gluc_Ac_DOWN 35 33 2 0 70
GX/Gluc_UP 28 15 2 0 45 73 Mixed sugar (xylose and glucose) regulated genes compared to glucose, Additional file 3: Table S2-17.
GX/Gluc_DOWN 17 7 4 0 28
GX/Gluc_Ac_UP 67 19 1 0 87 151 Mixed sugar (xylose and glucose) regulated genes compared to glucose only in the presence of acetate, Additional file 3: Table S2-18.
GX/Gluc_Ac_DOWN 33 24 6 1 64
  1. cGene: number of chromosomal genes, cIGR: number of chromosomal intergenic regions, pGene: number of plasmid genes, pIGR: number of plasmid intergenic regions. Total: Total number of genetic features including cGene, cIGR, pGene, and pIGR for either upregulated or downregulated genetic features. SUM: the sum of total upregulated and downregulated genetic features.
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