Table 2 Characteristics of metagenomic reads before and after quality filtering derived from DNA extracted from the four biogas reactors and their inoculum
From: A metagenomic study of the microbial communities in four parallel biogas reactors
Metagenome | Raw dataset | Filtered dataset | |||
|---|---|---|---|---|---|
Number of reads | Number of reads | Reads (%) | Mean sequence length (bp) | Mean GC ratio (%) | |
R1 | 245499 | 177017 | 72.10 | 413 | 43.08 |
R2 | 548434 | 390641 | 71.23 | 417 | 42.86 |
R3 | 182122 | 130610 | 71.72 | 410 | 43.75 |
R4 | 286008 | 205035 | 71.72 | 413 | 43.65 |
IN | 241804 | 172150 | 71.19 | 409 | 43.10 |