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Table 2 Genes regulated after lactose induction with different basal expression between NG 14 and RUT C30

From: Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain

Transcript ID

Cluster

Annotation

Ratio RUT C30/NG 14

Average reads

59272

1

Putative MFS transporter

-4.78

17462

82032

1

Putative protein of unknown function

4.46

32445

121491

1

Putative glycosyltransferase family 4

4.21

38826

61374

3

Putative MFS transporter

-5.99

7537

74156

3

Putative secreted pepsin PROA

-4.92

7152

3717

4

Putative 2-keto-3-deoxy-L-galactonate aldolase

-4.86

7427

76155

4

Putative acid phosphatase

-4.85

23883

122582

4

Putative mitochondrial dihydrodipicolinate synthase

-4.38

8170

69115

7

Putative dienelactone hydrolase

-5.11

27147

69944

8

Putative glycoside hydrolase family 31

7.01

1685

73643

8

Glycoside hydrolase family 61 EGL4/CEL61A

4.34

4641

121127

8

Glycoside hydrolase family 3 BXL1

5.65

6623

123967

8

Hydrophobin HFB3

6.8

2548

69276

9

Putative glycoside hydrolase family 30

4.15

556

72567

9

Glycoside hydrolase family 6 CBH2/CEL6A

4.64

10892

73638

9

Secreted cellulose induced protein CIP1

6.37

1326

76210

9

Glycoside hydrolase family 62 ABF2

7.65

653

120312

9

Glycoside hydrolase family 5 EGL2/CEL5A

7.41

2331

120961

9

Glycoside hydrolase family 61 CEL61B

4.36

434

121418

9

Carbohydrate esterase family AES1

6.76

1027

60945

Not clustered

Putative MFS transporter

-4.51

6194

79816

Not clustered

Putative transcriptional regulator GAL80

-9.6

59020

123251

Not clustered

Putative NADH-quinone oxidoreductase

4.67

16873

  1. Samples from T0 (before lactose induction) from NG 14 and RUT C30 were compared by means of RNA-seq experiments. The relative transcript abundance was measured in reads per kilobase of exon per million mapped sequence reads (RPKM). The log2 ratio of the RPKM values between RUT C30 and NG 14 were used to identify differentially expressed genes.