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Table 2 Genes regulated after lactose induction with different basal expression between NG 14 and RUT C30

From: Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain

Transcript ID Cluster Annotation Ratio RUT C30/NG 14 Average reads
59272 1 Putative MFS transporter -4.78 17462
82032 1 Putative protein of unknown function 4.46 32445
121491 1 Putative glycosyltransferase family 4 4.21 38826
61374 3 Putative MFS transporter -5.99 7537
74156 3 Putative secreted pepsin PROA -4.92 7152
3717 4 Putative 2-keto-3-deoxy-L-galactonate aldolase -4.86 7427
76155 4 Putative acid phosphatase -4.85 23883
122582 4 Putative mitochondrial dihydrodipicolinate synthase -4.38 8170
69115 7 Putative dienelactone hydrolase -5.11 27147
69944 8 Putative glycoside hydrolase family 31 7.01 1685
73643 8 Glycoside hydrolase family 61 EGL4/CEL61A 4.34 4641
121127 8 Glycoside hydrolase family 3 BXL1 5.65 6623
123967 8 Hydrophobin HFB3 6.8 2548
69276 9 Putative glycoside hydrolase family 30 4.15 556
72567 9 Glycoside hydrolase family 6 CBH2/CEL6A 4.64 10892
73638 9 Secreted cellulose induced protein CIP1 6.37 1326
76210 9 Glycoside hydrolase family 62 ABF2 7.65 653
120312 9 Glycoside hydrolase family 5 EGL2/CEL5A 7.41 2331
120961 9 Glycoside hydrolase family 61 CEL61B 4.36 434
121418 9 Carbohydrate esterase family AES1 6.76 1027
60945 Not clustered Putative MFS transporter -4.51 6194
79816 Not clustered Putative transcriptional regulator GAL80 -9.6 59020
123251 Not clustered Putative NADH-quinone oxidoreductase 4.67 16873
  1. Samples from T0 (before lactose induction) from NG 14 and RUT C30 were compared by means of RNA-seq experiments. The relative transcript abundance was measured in reads per kilobase of exon per million mapped sequence reads (RPKM). The log2 ratio of the RPKM values between RUT C30 and NG 14 were used to identify differentially expressed genes.