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Table 2 Protein families containing glycoside hydrolase (GH) or carbohydrate binding module (CBM) domains relevant to lignocellulose deconstruction that were targeted during metatranscriptome analysis

From: Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw

Protein family Type Family Dominant types
Pfam00150 GH 5 β-mannosidase, endo-β-1,4-glucanase, endo-β-1,4-mannosidase, endo-β-1,4-xylanase, β-1,4-cellobiosidase, β-1,3-mannanase, xyloglucan-specific endo-β-1,4-glucanase, exo-β-1,4-glucanase
Pfam00232 GH 1 β-glucosidase
Pfam00331 GH 10 Endo-β-1,4-xylanase, endo-β-1,3-xylanase
Pfam00457 GH 11 Xylanase
Pfam00722 GH 16 Endo-β-1,3-glucanase, endo-β-1,3(4)-glucanase, xyloglucanase
Pfam00759 GH 9 Endoglucanase, cellobiohydrolase, β-glucosidase
Pfam00840 GH 7 Endo-1,4-β-glucanase, cellobiohydrolase
Pfam00933 GH 3 β-glucosidase, 1,4-β-xylosidase, exo-1,3-1,4-glucanase, α-L-arabinofuranosidase
Pfam01270 GH 8 Cellulase, endo-β-1,4-xylanase, reducing-end xylose-releasing exo-oligoxylanase
Pfam01341 GH 6 Endoglucanase, cellobiohydrolase
Pfam01670 GH 12 Endoglucanase, xyloglucan hydrolase, β-1,3-1,4-glucanase
Pfam01915 GH 3C β-glucosidase, β-1,4-xylosidase, exo-1,3-1,4-glucanase, α-L-arabinofuranosidase
Pfam02011 GH 48 Reducing end-acting cellobiohydrolase, endo-β-1,4-glucanase
Pfam02015 GH 45 Endoglucanase
Pfam02156 GH 26 β-mannanase, β-1,3-xylanase
Pfam03443 GH 61 Lytic polysaccharide monooxygenase
Pfam03648 GH 67 N α-glucuronidase xylan, α-1,2-glucuronidase
Pfam03664 GH 62 α-L-arabinofuranosidase
Pfam04616 GH 43 β-xylosidase, α-L-arabinofuranosidase, arabinanase, xylanase
Pfam07477 GH 67C α-glucuronidase, xylan, α-1,2-glucuronidase
Pfam07488 GH 67 M α-glucuronidase, xylan, α-1,2-glucuronidase
Pfam00553 CBM 2 n/a
Pfam00734 CBM 1 n/a
Pfam00942 CBM 3 n/a
Pfam02013 CBM 10 n/a
Pfam02018 CBM 4, 9 n/a
Pfam03067 CBM 33 n/a
Pfam03422 CBM 6 n/a
Pfam03424 CBM 17, 28 n/a
Pfam03425 CBM 11 n/a
Pfam03426 CBM 15 n/a
Pfam09212 CBM 27 n/a
Pfam09478 CBM 49 n/a