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Table 2 Protein families containing glycoside hydrolase (GH) or carbohydrate binding module (CBM) domains relevant to lignocellulose deconstruction that were targeted during metatranscriptome analysis

From: Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw

Protein family

Type

Family

Dominant types

Pfam00150

GH

5

β-mannosidase, endo-β-1,4-glucanase, endo-β-1,4-mannosidase, endo-β-1,4-xylanase, β-1,4-cellobiosidase, β-1,3-mannanase, xyloglucan-specific endo-β-1,4-glucanase, exo-β-1,4-glucanase

Pfam00232

GH

1

β-glucosidase

Pfam00331

GH

10

Endo-β-1,4-xylanase, endo-β-1,3-xylanase

Pfam00457

GH

11

Xylanase

Pfam00722

GH

16

Endo-β-1,3-glucanase, endo-β-1,3(4)-glucanase, xyloglucanase

Pfam00759

GH

9

Endoglucanase, cellobiohydrolase, β-glucosidase

Pfam00840

GH

7

Endo-1,4-β-glucanase, cellobiohydrolase

Pfam00933

GH

3

β-glucosidase, 1,4-β-xylosidase, exo-1,3-1,4-glucanase, α-L-arabinofuranosidase

Pfam01270

GH

8

Cellulase, endo-β-1,4-xylanase, reducing-end xylose-releasing exo-oligoxylanase

Pfam01341

GH

6

Endoglucanase, cellobiohydrolase

Pfam01670

GH

12

Endoglucanase, xyloglucan hydrolase, β-1,3-1,4-glucanase

Pfam01915

GH

3C

β-glucosidase, β-1,4-xylosidase, exo-1,3-1,4-glucanase, α-L-arabinofuranosidase

Pfam02011

GH

48

Reducing end-acting cellobiohydrolase, endo-β-1,4-glucanase

Pfam02015

GH

45

Endoglucanase

Pfam02156

GH

26

β-mannanase, β-1,3-xylanase

Pfam03443

GH

61

Lytic polysaccharide monooxygenase

Pfam03648

GH

67 N

α-glucuronidase xylan, α-1,2-glucuronidase

Pfam03664

GH

62

α-L-arabinofuranosidase

Pfam04616

GH

43

β-xylosidase, α-L-arabinofuranosidase, arabinanase, xylanase

Pfam07477

GH

67C

α-glucuronidase, xylan, α-1,2-glucuronidase

Pfam07488

GH

67 M

α-glucuronidase, xylan, α-1,2-glucuronidase

Pfam00553

CBM

2

n/a

Pfam00734

CBM

1

n/a

Pfam00942

CBM

3

n/a

Pfam02013

CBM

10

n/a

Pfam02018

CBM

4, 9

n/a

Pfam03067

CBM

33

n/a

Pfam03422

CBM

6

n/a

Pfam03424

CBM

17, 28

n/a

Pfam03425

CBM

11

n/a

Pfam03426

CBM

15

n/a

Pfam09212

CBM

27

n/a

Pfam09478

CBM

49

n/a