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Table 5 Differential expression of protein families associated with lignocellulolytic activity in enriched thermophilic and mesophilic communities

From: Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw

Pfam Name Overexpressed in 1 Fold change over other community P -value, pseudo-Pfam comparison method 4,5 Adjusted P -value, DESEQ method 5
Pfam00150 GH5 M 2.73 0.960 1.000
Pfam00232 GH1 T 9.33 0.333 0.331
Pfam00331 GH10 T 6.90 0.540 0.369
Pfam00457 GH11 T 7.53 0.109 0.369
Pfam00722 GH16 M 2.57 0.769 1.000
Pfam00759 GH9 T 4.79 0.542 0.569
Pfam00840 GH7 T n/a2 0.291 0.256
Pfam00933 GH3 M 1.26 0.970 1.000
Pfam01270 GH8 T 1.28 0.975 1.000
Pfam01341 GH6 T 59.68 0.152 0.018
Pfam01670 GH12 T 20.49 0.623 0.466
Pfam01915 GH3C M 1.39 0.864 1.000
Pfam02011 GH48 T 129.95 0.105 0.012
Pfam02015 GH45 M n/a2 0.751 1.000
Pfam02156 GH26 M 7.94 0.890 0.878
Pfam03443 GH61 T 113.00 0.364 0.323
Pfam03648 GH67N M 1.10 0.859 1.000
Pfam03664 GH62 T 42.87 0.282 0.093
Pfam04616 GH43 M 1.16 0.946 1.000
Pfam07477 GH67C M 1.06 0.840 1.000
Pfam07488 GH67M M 1.15 0.667 1.000
Pfam00553 CBM2 T 30.07 0.097 0.012
Pfam00734 CBM1 n/a3 n/a3 n/a3 n/a3
Pfam00942 CBM3 T 29.40 0.179 0.221
Pfam02013 CBM10 M n/a2 0.485 0.093
Pfam02018 CBM4,9 M 1.47 0.247 1.000
Pfam03067 CBM33 T 49.61 0.028 0.016
Pfam03422 CBM6 M 2.31 0.930 1.000
Pfam03424 CBM17,28 M n/a2 0.956 1.000
Pfam03425 CBM11 M 1.27 0.988 1.000
Pfam03426 CBM15 M n/a2 0.656 1.000
Pfam09212 CBM27 n/a3 n/a3 n/a3 n/a3
Pfam09478 CBM49 n/a3 n/a3 n/a3 n/a3
  1. 1T, thermophilic community; M, mesophilic community.
  2. 2Fold change cannot be calculated because read count is 0 in one metatranscriptome.
  3. 3Pfam expression not detected in either metatranscriptome.
  4. 4P-value is the mean from running the algorithm three times.
  5. 5Bold values indicate P-values ≤ to the critical value of 0.1.