TY - JOUR AU - Luo, G. AU - Wang, W. AU - Angelidaki, I. PY - 2013 DA - 2013// TI - Anaerobic digestion for simultaneous sewage sludge treatment and CO biomethanation: process performance and microbial ecology JO - Environ Sci Technol VL - 47 ID - Luo2013 ER - TY - JOUR AU - Luo, G. AU - Angelidaki, I. PY - 2013 DA - 2013// TI - Co-digestion of manure and whey for in situ biogas upgrading by the addition of H2: process performance and microbial insights JO - Appl Microbiol Biotechnol VL - 97 UR - https://doi.org/10.1007/s00253-012-4547-5 DO - 10.1007/s00253-012-4547-5 ID - Luo2013 ER - TY - JOUR AU - Werner, J. J. AU - Knights, D. AU - Garcia, M. L. AU - Scalfone, N. B. AU - Smith, S. AU - Yarasheski, K. PY - 2011 DA - 2011// TI - Bacterial community structures are unique and resilient in full-scale bioenergy systems JO - Proc Natl Acad Sci U S A VL - 108 UR - https://doi.org/10.1073/pnas.1015676108 DO - 10.1073/pnas.1015676108 ID - Werner2011 ER - TY - JOUR AU - Chase, J. M. PY - 2010 DA - 2010// TI - Stochastic community assembly causes higher biodiversity in more productive environments JO - Science VL - 328 UR - https://doi.org/10.1126/science.1187820 DO - 10.1126/science.1187820 ID - Chase2010 ER - TY - JOUR AU - Chase, J. M. PY - 2007 DA - 2007// TI - Drought mediates the importance of stochastic community assembly JO - Proc Natl Acad Sci U S A VL - 104 UR - https://doi.org/10.1073/pnas.0704350104 DO - 10.1073/pnas.0704350104 ID - Chase2007 ER - TY - JOUR AU - Ofiteru, I. D. AU - Lunn, M. AU - Curtis, T. P. AU - Wells, G. F. AU - Criddle, C. S. AU - Francis, C. A. PY - 2010 DA - 2010// TI - Combined niche and neutral effects in a microbial wastewater treatment community JO - Proc Natl Acad Sci U S A VL - 107 UR - https://doi.org/10.1073/pnas.1000604107 DO - 10.1073/pnas.1000604107 ID - Ofiteru2010 ER - TY - JOUR AU - Fargione, J. AU - Brown, C. S. AU - Tilman, D. PY - 2003 DA - 2003// TI - Community assembly and invasion: an experimental test of neutral versus niche processes JO - Proc Natl Acad Sci U S A VL - 100 UR - https://doi.org/10.1073/pnas.1033107100 DO - 10.1073/pnas.1033107100 ID - Fargione2003 ER - TY - JOUR AU - Chave, J. PY - 2004 DA - 2004// TI - Neutral theory and community ecology JO - Ecol Lett VL - 7 UR - https://doi.org/10.1111/j.1461-0248.2003.00566.x DO - 10.1111/j.1461-0248.2003.00566.x ID - Chave2004 ER - TY - JOUR AU - Jiang, L. AU - Patel, S. N. PY - 2008 DA - 2008// TI - Community assembly in the presence of disturbance: A microcosm experiment JO - Ecology VL - 89 UR - https://doi.org/10.1890/07-1263.1 DO - 10.1890/07-1263.1 ID - Jiang2008 ER - TY - JOUR AU - Trexler, J. C. AU - Loftus, W. F. AU - Perry, S. PY - 2005 DA - 2005// TI - Disturbance frequency and community structure in a twenty-five year intervention study JO - Oecologia VL - 145 UR - https://doi.org/10.1007/s00442-005-0094-4 DO - 10.1007/s00442-005-0094-4 ID - Trexler2005 ER - TY - JOUR AU - Rincón, B. AU - Borja, R. AU - González, J. M. AU - Portillo, M. C. AU - Sáiz-Jiménez, C. PY - 2008 DA - 2008// TI - Influence of organic loading rate and hydraulic retention time on the performance, stability and microbial communities of one-stage anaerobic digestion of two-phase olive mill solid residue JO - Biochem Eng J VL - 40 UR - https://doi.org/10.1016/j.bej.2007.12.019 DO - 10.1016/j.bej.2007.12.019 ID - Rincón2008 ER - TY - JOUR AU - Nielsen, H. B. AU - Mladenovska, Z. AU - Westermann, P. AU - Ahring, B. K. PY - 2004 DA - 2004// TI - Comparison of two-stage thermophilic (68°C/55°C) anaerobic digestion with one-stage thermophilic (55°C) digestion of cattle manure JO - Biotechnol Bioeng VL - 86 UR - https://doi.org/10.1002/bit.20037 DO - 10.1002/bit.20037 ID - Nielsen2004 ER - TY - JOUR AU - Chae, K. J. AU - Jang, A. AU - Yim, S. K. AU - Kim, I. S. PY - 2008 DA - 2008// TI - The effects of digestion temperature and temperature shock on the biogas yields from the mesophilic anaerobic digestion of swine manure JO - Bioresour Technol VL - 99 UR - https://doi.org/10.1016/j.biortech.2006.11.063 DO - 10.1016/j.biortech.2006.11.063 ID - Chae2008 ER - TY - JOUR AU - Boe, K. AU - Angelidaki, I. PY - 2009 DA - 2009// TI - Serial CSTR digester configuration for improving biogas production from manure JO - Water Res VL - 43 UR - https://doi.org/10.1016/j.watres.2008.09.041 DO - 10.1016/j.watres.2008.09.041 ID - Boe2009 ER - TY - JOUR AU - Nielsen, H. B. AU - Ahring, B. K. PY - 2006 DA - 2006// TI - Responses of the biogas process to pulses of oleate in reactors treating mixtures of cattle and pig manure JO - Biotechnol Bioeng VL - 95 UR - https://doi.org/10.1002/bit.20963 DO - 10.1002/bit.20963 ID - Nielsen2006 ER - TY - JOUR AU - Ahn, J. H. AU - Forster, C. F. PY - 2002 DA - 2002// TI - The effect of temperature variations on the performance of mesophilic and thermophilic anaerobic filters treating a simulated papermill wastewater JO - Process Biochem VL - 37 UR - https://doi.org/10.1016/S0032-9592(01)00245-X DO - 10.1016/S0032-9592(01)00245-X ID - Ahn2002 ER - TY - JOUR AU - Ye, L. AU - Zhang, T. PY - 2011 DA - 2011// TI - Pathogenic bacteria in sewage treatment plants as revealed by 454 pyrosequencing JO - Environ Sci Technol VL - 45 UR - https://doi.org/10.1021/es201045e DO - 10.1021/es201045e ID - Ye2011 ER - TY - JOUR AU - Loman, N. J. AU - Misra, R. V. AU - Dallman, T. J. AU - Constantinidou, C. AU - Gharbia, S. E. AU - Wain, J. PY - 2012 DA - 2012// TI - Performance comparison of benchtop high-throughput sequencing platforms JO - Nat Biotechnol VL - 30 UR - https://doi.org/10.1038/nbt.2198 DO - 10.1038/nbt.2198 ID - Loman2012 ER - TY - STD TI - Lescure JP, Delannoy B, Verrier D, Albagnac G. Consequence of a thermal accident on the microbial activity of an industrial anbaerobic filter. Proceedings of the 5th international conference on anaerobic digestion 1988:211–214. ID - ref19 ER - TY - JOUR AU - Yu, H. Q. AU - Fang, H. H. P. PY - 2003 DA - 2003// TI - Acidogenesis of gelatin-rich wastewater in an upflow anaerobic reactor: influence of pH and temperature JO - Water Res VL - 37 UR - https://doi.org/10.1016/S0043-1354(02)00256-7 DO - 10.1016/S0043-1354(02)00256-7 ID - Yu2003 ER - TY - JOUR AU - Demirel, B. AU - Scherer, P. PY - 2008 DA - 2008// TI - The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review JO - Rev Environ Sci Biotechnol VL - 7 UR - https://doi.org/10.1007/s11157-008-9131-1 DO - 10.1007/s11157-008-9131-1 ID - Demirel2008 ER - TY - JOUR AU - Ma, J. X. AU - Carballa, M. AU - Caveye, P. AU - Verstraete, W. PY - 2009 DA - 2009// TI - Enhanced propionic acid degradation (EPAD) system: Proof of principle and feasibility JO - Water Res VL - 43 UR - https://doi.org/10.1016/j.watres.2009.04.046 DO - 10.1016/j.watres.2009.04.046 ID - Ma2009 ER - TY - JOUR AU - Boe, K. AU - Batstone, D. J. AU - Steyer, J. P. AU - Angelidaki, I. PY - 2010 DA - 2010// TI - State indicators for monitoring the anaerobic digestion process JO - Water Res VL - 44 UR - https://doi.org/10.1016/j.watres.2010.07.043 DO - 10.1016/j.watres.2010.07.043 ID - Boe2010 ER - TY - JOUR AU - Bates, S. T. AU - Berg-Lyons, D. AU - Caporaso, J. G. AU - Walters, W. A. AU - Knight, R. AU - Fierer, N. PY - 2011 DA - 2011// TI - Examining the global distribution of dominant archaeal populations in soil JO - ISME J VL - 5 UR - https://doi.org/10.1038/ismej.2010.171 DO - 10.1038/ismej.2010.171 ID - Bates2011 ER - TY - JOUR AU - Caporaso, J. G. AU - Lauber, C. L. AU - Walters, W. A. AU - Berg-Lyons, D. AU - Lozupone, C. A. AU - Turnbaugh, P. J. PY - 2011 DA - 2011// TI - Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample JO - Proc Natl Acad Sci U S A VL - 108 UR - https://doi.org/10.1073/pnas.1000080107 DO - 10.1073/pnas.1000080107 ID - Caporaso2011 ER - TY - JOUR AU - Sundberg, C. AU - Al-Soud, W. A. AU - Larsson, M. AU - Alm, E. AU - Yekta, S. S. AU - Svensson, B. H. PY - 2013 DA - 2013// TI - 454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters JO - FEMS Microbiol Ecol VL - 85 UR - https://doi.org/10.1111/1574-6941.12148 DO - 10.1111/1574-6941.12148 ID - Sundberg2013 ER - TY - JOUR AU - Riviere, D. AU - Desvignes, V. AU - Pelletier, E. AU - Chaussonnerie, S. AU - Guermazi, S. AU - Weissenbach, J. PY - 2009 DA - 2009// TI - Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge JO - ISME J VL - 3 UR - https://doi.org/10.1038/ismej.2009.2 DO - 10.1038/ismej.2009.2 ID - Riviere2009 ER - TY - JOUR AU - Lu, L. AU - Xing, D. F. AU - Ren, N. Q. PY - 2012 DA - 2012// TI - Pyrosequencing reveals highly diverse microbial communities in microbial electrolysis cells involved in enhanced H-2 production from waste activated sludge JO - Water Res VL - 46 UR - https://doi.org/10.1016/j.watres.2012.02.005 DO - 10.1016/j.watres.2012.02.005 ID - Lu2012 ER - TY - JOUR AU - Debowski, M. AU - Korzeniewska, E. AU - Filipkowska, Z. AU - Zielinski, M. AU - Kwiatkowski, R. PY - 2014 DA - 2014// TI - Possibility of hydrogen production during cheese whey fermentation process by different strains of psychrophilic bacteria JO - Int J Hydrog Energy VL - 39 UR - https://doi.org/10.1016/j.ijhydene.2013.11.082 DO - 10.1016/j.ijhydene.2013.11.082 ID - Debowski2014 ER - TY - JOUR AU - Lay, J. J. PY - 2001 DA - 2001// TI - Biohydrogen generation by mesophilic anaerobic fermentation of microcrystalline cellulose JO - Biotechnol Bioeng VL - 74 UR - https://doi.org/10.1002/bit.1118 DO - 10.1002/bit.1118 ID - Lay2001 ER - TY - JOUR AU - Karakashev, D. AU - Batstone, D. J. AU - Angelidaki, I. PY - 2005 DA - 2005// TI - Influence of environmental conditions on methanogenic compositions in anaerobic biogas reactors JO - Appl Environ Microbiol VL - 71 UR - https://doi.org/10.1128/AEM.71.1.331-338.2005 DO - 10.1128/AEM.71.1.331-338.2005 ID - Karakashev2005 ER - TY - JOUR AU - Hao, L. P. AU - Lu, F. AU - He, P. J. AU - Li, L. AU - Shao, L. M. PY - 2011 DA - 2011// TI - Predominant contribution of syntrophic acetate oxidation to thermophilic methane formation at high acetate concentrations JO - Environ Sci Technol VL - 45 UR - https://doi.org/10.1021/es102228v DO - 10.1021/es102228v ID - Hao2011 ER - TY - JOUR AU - Fotidis, I. A. AU - Karakashev, D. AU - Kotsopoulos, T. A. AU - Martzopoulos, G. G. AU - Angelidaki, I. PY - 2013 DA - 2013// TI - Effect of ammonium and acetate on methanogenic pathway and methanogenic community composition JO - FEMS Microbiol Ecol VL - 83 UR - https://doi.org/10.1111/j.1574-6941.2012.01456.x DO - 10.1111/j.1574-6941.2012.01456.x ID - Fotidis2013 ER - TY - STD TI - De Francisci D, Kougias PG, Treu L, Campanaro S, Angelidaki I. Microbial diversity and dynamicity of biogas reactors due to radical changes of feedstock composition. Bioresour Technol. 2015;176:56-64, doi: http://dx.doi.org/10.1016/j.biortech.2014.10.126. UR - http://dx.doi.org/10.1016/j.biortech.2014.10.126 ID - ref34 ER - TY - STD TI - Zhou JZ, Liu WZ, Deng Y, Jiang YH, Xue K, He ZL, et al. Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community. Mbio 2013;4:e00584. ID - ref35 ER - TY - JOUR AU - Pagaling, E. AU - Strathdee, F. AU - Spears, B. M. AU - Cates, M. E. AU - Allen, R. J. AU - Free, A. PY - 2014 DA - 2014// TI - Community history affects the predictability of microbial ecosystem development JO - ISME J VL - 8 UR - https://doi.org/10.1038/ismej.2013.150 DO - 10.1038/ismej.2013.150 ID - Pagaling2014 ER - TY - JOUR AU - Zhang, H. AU - Banaszak, J. E. AU - Parameswaran, P. AU - Alder, J. AU - Krajmalnik-Brown, R. AU - Rittmann, B. E. PY - 2009 DA - 2009// TI - Focused-Pulsed sludge pre-treatment increases the bacterial diversity and relative abundance of acetoclastic methanogens in a full-scale anaerobic digester JO - Water Res VL - 43 UR - https://doi.org/10.1016/j.watres.2009.07.034 DO - 10.1016/j.watres.2009.07.034 ID - Zhang2009 ER - TY - JOUR AU - Cole, J. R. AU - Wang, Q. AU - Cardenas, E. AU - Fish, J. AU - Chai, B. AU - Farris, R. J. PY - 2009 DA - 2009// TI - The ribosomal database project: improved alignments and new tools for rRNA analysis JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkn879 DO - 10.1093/nar/gkn879 ID - Cole2009 ER - TY - STD TI - Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M, et al. The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 2008;9:386. ID - ref39 ER - TY - BOOK PY - 1995 DA - 1995// TI - Standard methods for the examination of water and wastewater, 19 th ed PB - American Public Health Association CY - New York, USA ID - ref40 ER - TY - JOUR AU - Luo, G. AU - Talebnia, F. AU - Karakashev, D. AU - Xie, L. AU - Zhou, Q. AU - Angelidaki, I. PY - 2010 DA - 2010// TI - Enhanced bioenergy recovery from rapeseed plant in a biorefinery concept JO - Bioresour Technol VL - 102 ID - Luo2010 ER -