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Table 4 List of the top 25 most up-regulated ESTs upon ND in B. braunii 779

From: Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

Rka EST_IDb BH_IDc logFC p value Descriptiond
1 c39922_g1_i1 Ost9901_3|32601 12.06 1.2E−13 Ammonia permease
2 c63389_g1_i3 Coc_C169_1|23517 10.56 4.1E−09 Glutamine synthetase
3 c9966_g1_i1 Chlre4|188119 10.36 3.6E−09 Oxidoreductase
4 c27174_g1_i1 Coc_C169_1|52379 9.57 8.9E–09 Glycogen phosphorylase
5 c60040_g1_i1 Coc_C169_1|32937 9.49 1.3E−08 Pyruvate kinase
6 c90800_g1_i1 ChlNC64A_1|143431 9.48 2.3E−09 Glutamine synthetase
7 c71872_g1_i2 Ost9901_3|50765 9.19 2.8E−10 Sulfite reductase
8 c52649_g1_i1 Coc_C169_1|52379 8.65 1.0E−07 Glycogen phosphorylase
9 c81537_g1_i1 Chlre4|206116 8.04 4.1E−08 Unknown
10 c67134_g2_i2 MicpuN3|63658 7.94 1.3E−06 Glutamate synthase
11 c78877_g1_i1 Chlre4|140452 7.77 5.1E−07 Unknown
12 c49437_g1_i2 MicpuN3|97997 7.67 1.2E−06 Unknown
13 c9210_g1_i2 Chlre4|132210 7.66 1.7E−07 3-phosphoglycerate kinase
14 c70762_g1_i7 Chlre4|140487 7.65 1.8E−07 Glutamate synthase
15 c59003_g1_i1 MicpuN3|63658 7.45 9.2E−06 Glutamate synthase
16 c19522_g1_i1 Thaps3|21748 7.24 6.4E−07 Fructose 1,6-bisphosphate aldolase
17 c20385_g1_i1 Ost9901_3|30705 7.14 9.0E−07 Cohesin subunit
18 c27189_g1_i1 Thaps3|27187 6.88 2.4E−07 Transaldolase
19 c24873_g1_i2 MicpuN3|89262 6.88 1.3E−06 FOG: RCC1 domain
20 c51175_g1_i1 Coc_C169_1|29458 6.87 3.8E−06 Citrate synthase
21 c47749_g1_i1 Coc_C169_1|9065 6.87 1.0E−07 Transcription factors
22 c61180_g1_i2 Chlre4|205746 6.79 7.9E−06 Glutamate synthase
23 c2096_g1_i1 MicpuN3|82943 6.76 4.0E−07 RNA Helicase
24 c36160_g1_i3 Thaps3|262283 6.74 5.6E−07 Acyl-CoA synthetase
25 c27223_g1_i2 Thaps3|269844 6.71 4.0E−07 UDP-glucuronosyl transferase
  1. aRk stands for rank (i.e., by ratio).
  2. bEST_ID for B. braunii ESTs.
  3. cBH_ID for ID of the best-hit.
  4. dDescription is based on the KOG annotation associated with the 6 completed algal genomes in JGI (see text).