Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

Fang, Lei; Sun, Deying; Xu, Zhenyu; He, Jing; Qi, Shuyuan; Chen, Xin; Chew, Wee; Liu, Jianhua

doi:10.1186/s13068-015-0307-y

Biotechnology for Biofuels and Bioproducts

Table 5 List of the top 25 most down-regulated ESTs upon ND in B. braunii 779

From: Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

Rk^a	EST_ID^b	BH_ID^c	logFC	p value	Description^d
1	c73365_g3_i6	Coc_C169_1\|45719	−4.55	6.4E−03	Unknown
2	c54903_g1_i1	Coc_C169_1\|45718	−4.40	2.5E−03	Tyrosine kinase
3	c72890_g1_i2	ChlNC64A_1\|144962	−4.20	1.8E−03	Prolylcarboxypeptidase
4	c69499_g1_i5	Chlre4\|149722	−4.18	4.5E−03	Unknown
5	c66708_g1_i4	Coc_C169_1\|65911	−3.98	2.8E−04	Collagens
6	c72757_g1_i1	Coc_C169_1\|17756	−3.54	1.5E−03	Isocitrate lyase
7	c66635_g1_i1	ChlNC64A_1\|139124	−3.46	2.8E−03	Nuclear receptor coregulator
8	c32919_g1_i2	Coc_C169_1\|18195	−3.44	2.1E−04	Aspartate aminotransferase
9	c71206_g1_i2	Coc_C169_1\|62318	−3.36	2.0E−02	UDP-glucuronosyl transferase
10	c68672_g1_i4	Coc_C169_1\|65911	−3.31	9.4E−04	Collagens
11	c55715_g1_i1	Coc_C169_1\|68180	−3.27	6.9E−04	Ca²⁺-dependent protein kinase
12	c71767_g1_i2	Chlre4\|104719	−3.23	5.1E−03	ATP-dependent RNA helicase
13	c69499_g1_i4	Chlre4\|149722	−3.16	1.7E−02	Unknown
14	c73427_g1_i1	Coc_C169_1\|35165	−3.01	1.0E−02	O-linked GlcNAc transferase
15	c66185_g1_i1	Coc_C169_1\|33465	−3.01	1.6E−02	Unknown
16	c67100_g1_i1	Chlre4\|130199	−3.01	2.2E−02	Acetylglutamate kinase
17	c71718_g1_i18	Coc_C169_1\|68054	−3.01	4.4E−03	Ca²⁺-permeable cation channel
18	c70935_g1_i8	Coc_C169_1\|13500	−3.00	4.4E−03	Unknown
19	c51991_g1_i1	Coc_C169_1\|63373	−2.99	1.2E−02	Diacylglycerol acyltransferase
20	c74265_g5_i3	Coc_C169_1\|30369	−2.94	3.9E−03	Malate synthase
21	c73301_g5_i1	Coc_C169_1\|17144	−2.94	1.5E−02	Serine/threonine protein kinase
22	c71077_g1_i3	ChlNC64A_1\|59702	−2.94	8.1E−03	Unknown
23	c73505_g1_i1	Coc_C169_1\|41290	−2.92	2.0E−03	Unknown
24	c74003_g1_i7	Coc_C169_1\|35165	−2.89	6.3E−03	O-linked GlcNAc transferase
25	c62188_g1_i1	Coc_C169_1\|11065	−2.89	9.6E−03	Sensory transduction histidine kinase

^aRk stands for rank (i.e., by inverse ratio).
^bEST_ID for B. braunii ESTs.
^cBH_ID for ID of the best-hit.
^dDescription is based on the KOG annotation associated with the 6 completed algal genomes in JGI (see text).

Back to article page

ISSN: 2731-3654

Contact us

General enquiries: journalsubmissions@springernature.com