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Table 6 Summary of QTL observed for mapping population G33 × G43

From: Identification of QTL markers contributing to plant growth, oil yield and fatty acid composition in the oilseed crop Jatropha curcas L.

Trait Observations (n) Linkage group Position
(cM)
LODa PVE Bayes 95 % CI (cM) Beneficial allele Effectb QTL plot Additional file 8: Effect plot Additional file 9:
Total seeds
Year 2 (NPc)
254 5 22.9 (G104) 3.05* 4.6 0.0–37.0 G33 Dom Fig. S5a Fig. S6a
Total seeds
Year 3
251 7 30.3 (1398222|12344025) 3.52** 5.9 12.0–38.0 G33 Dom Fig. S5b Fig. S6b
4 8.0 3.19* 5.4 0.0–34.5 G33 Dom Fig. S6c
100-seed weight
Year 1
243 4 40.0 6.12*** 9.5 28.0–55.0 G33 Rec Fig. S5c Fig. S6d
2 28.0 5.66*** 8.7 24.3–35.0 G33 Dom Fig. S6e
11 20.5 (G28) 4.16*** 6.3 4.0–37.0 G33 Add Fig. S6f
100-seed weight
Year 2
250 4 35.9 (AG806) 15.09*** 18.5 30.0–42.0 G33 Add Fig. S5d Fig. S6g
11 26.0 11.39*** 13.5 21.2–27.0 G33 Add Fig. S6h
2 23.0 5.35*** 6.0 18.0–26.0 G33 Dom Fig. S6i
10 3.0 4.39*** 4.9 0.0–11.0 G43 Dom Fig. S6j
100-seed weight
Year 3
253 4 41.0 6.82*** 8.9 35.9–58.9 G33 Add Fig. S5e Fig. S6k
9 50.8 (1408478|12317739) 4.41*** 5.6 42.0–51.5 G33 Dom Fig. S6l
11 1.0 3.53*** 4.5 0.0–10.0 G33 Rec Fig. S6m
2 37.0 3.15** 4.0 15.0–40.0 G33 Dom/OD Fig. S6n
11 26.8 (1398998|12324489) 2.96** 3.7 7.0–32.0 G33 Add Fig. S6o
10 4.0 2.64** 3.2 0.0–15.0 G43 Dom Fig. S6p
Oil content
Year 2
249 6 24.0 5.62*** 7.6 1.0–34.0 G43 Rec Fig. S5f Fig. S6q
10 0.0 (Jcuint152) 4.89*** 6.5 0.0–5.0 G43 Add Fig. S6r
4 2.5 (1416680|12276533) 4.51*** 6.0 0.0–10.0 G33 Dom Fig. S6s
5 43.8 (AG517) 4.13*** 5.5 27.7–49.0 G33 Dom Fig. S6t
Oil content
Year 3
253 5 48.0 (1407850|12321642) 7.07*** 11.5 40.0–51.0 G33 Dom Fig. S5g Fig. S6u
6 45.5 (1406827|12348279) 3.13*** 4.9 1.0–51.0 G43 Rec Fig. S6v
  1. aThe LOD significance thresholds are *** p = 0.01, ** p = 0.05 or * p = 0.10
  2. bEffects are overdominant (OD), additive (Add) or dominant (Dom)
  3. cQTL for total seed yield in year 2 were obtained by performing non-parametric analysis