Table 6 Summary of QTL observed for mapping population G33 × G43
Trait | Observations (n) | Linkage group | Position (cM) | LODa | PVE | Bayes 95Â % CI (cM) | Beneficial allele | Effectb | QTL plot Additional file 8: | Effect plot Additional file 9: |
|---|---|---|---|---|---|---|---|---|---|---|
Total seeds Year 2 (NPc) | 254 | 5 | 22.9 (G104) | 3.05* | 4.6 | 0.0–37.0 | G33 | Dom | Fig. S5a | Fig. S6a |
Total seeds Year 3 | 251 | 7 | 30.3 (1398222|12344025) | 3.52** | 5.9 | 12.0–38.0 | G33 | Dom | Fig. S5b | Fig. S6b |
4 | 8.0 | 3.19* | 5.4 | 0.0–34.5 | G33 | Dom | Fig. S6c | |||
100-seed weight Year 1 | 243 | 4 | 40.0 | 6.12*** | 9.5 | 28.0–55.0 | G33 | Rec | Fig. S5c | Fig. S6d |
2 | 28.0 | 5.66*** | 8.7 | 24.3–35.0 | G33 | Dom | Fig. S6e | |||
11 | 20.5 (G28) | 4.16*** | 6.3 | 4.0–37.0 | G33 | Add | Fig. S6f | |||
100-seed weight Year 2 | 250 | 4 | 35.9 (AG806) | 15.09*** | 18.5 | 30.0–42.0 | G33 | Add | Fig. S5d | Fig. S6g |
11 | 26.0 | 11.39*** | 13.5 | 21.2–27.0 | G33 | Add | Fig. S6h | |||
2 | 23.0 | 5.35*** | 6.0 | 18.0–26.0 | G33 | Dom | Fig. S6i | |||
10 | 3.0 | 4.39*** | 4.9 | 0.0–11.0 | G43 | Dom | Fig. S6j | |||
100-seed weight Year 3 | 253 | 4 | 41.0 | 6.82*** | 8.9 | 35.9–58.9 | G33 | Add | Fig. S5e | Fig. S6k |
9 | 50.8 (1408478|12317739) | 4.41*** | 5.6 | 42.0–51.5 | G33 | Dom | Fig. S6l | |||
11 | 1.0 | 3.53*** | 4.5 | 0.0–10.0 | G33 | Rec | Fig. S6m | |||
2 | 37.0 | 3.15** | 4.0 | 15.0–40.0 | G33 | Dom/OD | Fig. S6n | |||
11 | 26.8 (1398998|12324489) | 2.96** | 3.7 | 7.0–32.0 | G33 | Add | Fig. S6o | |||
10 | 4.0 | 2.64** | 3.2 | 0.0–15.0 | G43 | Dom | Fig. S6p | |||
Oil content Year 2 | 249 | 6 | 24.0 | 5.62*** | 7.6 | 1.0–34.0 | G43 | Rec | Fig. S5f | Fig. S6q |
10 | 0.0 (Jcuint152) | 4.89*** | 6.5 | 0.0–5.0 | G43 | Add | Fig. S6r | |||
4 | 2.5 (1416680|12276533) | 4.51*** | 6.0 | 0.0–10.0 | G33 | Dom | Fig. S6s | |||
5 | 43.8 (AG517) | 4.13*** | 5.5 | 27.7–49.0 | G33 | Dom | Fig. S6t | |||
Oil content Year 3 | 253 | 5 | 48.0 (1407850|12321642) | 7.07*** | 11.5 | 40.0–51.0 | G33 | Dom | Fig. S5g | Fig. S6u |
6 | 45.5 (1406827|12348279) | 3.13*** | 4.9 | 1.0–51.0 | G43 | Rec | Fig. S6v |