Table 1 De novo identification of sequence repeats in the genome of L. minor
Class | Number of elements | Elements percentage (%) | Sequence occupied (bp) | Sequence percentage of transposable elements (%) | Sequence percentage of genome (%) |
|---|---|---|---|---|---|
Retrotransposons | 223,595 | 34.09 | 152,153,999 | 50.76 | 31.20 |
 LTR Copia | 124,171 | 18.93 | 91,641,466 | 30.57 | 18.79 |
 LTR Gypsy | 81,828 | 12.48 | 51,647,357 | 17.23 | 10.59 |
 LTR other | 4532 | 0.69 | 943,224 | 0.31 | 0.19 |
 LINE | 10,193 | 1.55 | 6,598,659 | 2.20 | 1.35 |
 SINE | 2871 | 0.44 | 1,323,293 | 0.44 | 0.27 |
 DNA transposons | 54,699 | 8.34 | 24,778,060 | 8.27 | 5.08 |
Tandem repeats | 152,112 | 23.19 | 19,062,495 | 6.36 | 3.91 |
 Satellite | 7243 | 1.10 | 2,821,147 | 0.94 | 0.58 |
 Low complexity | 18,075 | 2.76 | 1,464,636 | 0.49 | 0.30 |
 Simple repeats | 126,794 | 19.33 | 14,776,712 | 4.93 | 3.03 |
Unclassified | 225,397 | 34.37 | 103,759,727 | 34.61 | 21.27 |
Total | 655,803 | 100 | 299,754,281 | 100 | 61.46 |