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Table 1 De novo identification of sequence repeats in the genome of L. minor

From: The first draft genome of the aquatic model plant Lemna minor opens the route for future stress physiology research and biotechnological applications

Class Number of elements Elements percentage (%) Sequence occupied (bp) Sequence percentage of transposable elements (%) Sequence percentage of genome (%)
Retrotransposons 223,595 34.09 152,153,999 50.76 31.20
 LTR Copia 124,171 18.93 91,641,466 30.57 18.79
 LTR Gypsy 81,828 12.48 51,647,357 17.23 10.59
 LTR other 4532 0.69 943,224 0.31 0.19
 LINE 10,193 1.55 6,598,659 2.20 1.35
 SINE 2871 0.44 1,323,293 0.44 0.27
 DNA transposons 54,699 8.34 24,778,060 8.27 5.08
Tandem repeats 152,112 23.19 19,062,495 6.36 3.91
 Satellite 7243 1.10 2,821,147 0.94 0.58
 Low complexity 18,075 2.76 1,464,636 0.49 0.30
 Simple repeats 126,794 19.33 14,776,712 4.93 3.03
Unclassified 225,397 34.37 103,759,727 34.61 21.27
Total 655,803 100 299,754,281 100 61.46