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Table 3 Comparisons of homologues between D. tertiolecta and other five green algae with reference genome sequences

From: RNA-Seq transcriptomic analysis with Bag2D software identifies key pathways enhancing lipid yield in a high lipid-producing mutant of the non-model green alga Dunaliella tertiolecta

Algal reference

Cre

Csu

Olu

Vca

ChlN

Reference Transcripts or proteins #

19,526

9629

7796

15,285

9791

BlastN

 Transcript hit (E-value = 0)

82 (0.42 %)

18 (0.19 %)

0 (0.00 %)

24 (0.16 %)

20 (0.20 %)

 Transcript hit (E-value ≤10−10)

574 (2.94 %)

229 (2.38 %)

15 (0.19 %)

246 (1.61 %)

281 (2.87 %)

 Transcript hit (E-value ≤10−6)

611 (3.13 %)

249 (2.59 %)

16 (0.21 %)

269 (1.76 %)

307 (3.14 %)

 Transcript hit (E-value ≤10−3)

654 (3.35 %)

252 (2.62 %)

16 (0.21 %)

278 (1.82 %)

315 (3.22 %)

BlastX

Transcript hit (E-value = 0)

583 (2.99 %)

356 (3.70 %)

205 (2.63 %)

523 (3.42 %)

239 (2.44 %)

Transcript hit (E-value ≤10−10)

6610 (33.85 %)

5025 (52.19 %)

4002 (51.33 %)

6249 (40.88 %)

5106 (52.15 %)

Transcript hit (E-value ≤10−6)

7023 (35.97 %)

5643 (58.60 %)

4592 (58.90 %)

6986 (45.70 %)

5773 (58.96 %)

Transcript hit (E-value ≤10−3)

8561 (43.84 %)

6393 (66.39 %)

5267 (67.56 %)

8162 (53.40 %)

6604 (67.45 %)

  1. The numbers before and within brackets are the number of D. tertiolecta transcripts with Blast hits from reference alga and the hitting percentage in the corresponding reference transcripts/proteins
  2. Cre, C. reinhardtii; Csu, C. subellipsoidea; Olu, O. lucimarinus; Vca, V. carteri; ChlN, C. variabillis N64A