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Table 1 Abundant clusters (clusters at 70 % identity with more than 3 sequences) of secreted proteins in RWS

From: Metasecretome analysis of a lignocellulolytic microbial consortium grown on wheat straw, xylan and xylose

Cluster # PS LRS Best PSI-BLAST hit vs. NCBI (organism source) Accession No. COV (%) e value Identity Domain ID Domain description
1 7 161 Hemagglutinin (Sphingobacterium) WP_045753147.1 76 8E−74 90 pfam01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
2 6 159 RNA methyltransferase (Sphingobacterium) KKX48125.1 100 3E−110 100 pfam00588 SpoU rRNA methylase family
3 6 136 Flagellin (Enterobacter) WP_042717930.1 100 4E−84 98 pfam00669 Bacterial flagellin
4 6 155 Membrane protein (Sphingobacterium) WP_045755907.1 100 5E−94 90 pfam14322 Starch-binding associating with outer membrane (SusD)
5 6 161 Pyruvate dehydrogenase (Sphingobacterium) WP_021189278.1 100 6E−111 100 pfam02780 Transketolase
6 6 83 Membrane protein (Sphingobacterium) WP_045753095.1 100 1E−40 94 TIGR04056 TonB-linked outer membrane protein, SusC/RagA family
7 6 153 Outer membrane lipoprotein (Acinetobacter) WP_004695452.1 96 5E−104 100 pfam03548 Outer membrane lipoprotein carrier protein LolA
8 6 154 Molecular chaperone GroEL (Sphingobacterium) WP_045754355.1 100 2E−94 99 PRK00013 Chaperonin GroEL
9 5 149 Hypothetical protein (Sphingobacterium) WP_021190406.1 100 6E−90 94 TIGR04056 TonB-linked outer membrane protein, SusC/RagA family
10 4 153 Aminopeptidase (Sphingobacterium) WP_045755761.1 100 3E−107 99 cd02619 C1 peptidase family, also referred to as the papain family
11 4 155 Hypothetical protein (Sphingobacterium) WP_038697635.1 98 9E−95 86 pfam06283 Trehalose utilization
12 4 131 Hypothetical protein (Sphingobacterium) WP_021189714.1 100 1E−74 85 cd02968 Synthesis of cytochrome c oxidase
13 4 154 Hypothetical protein (Sphingobacterium) WP_021188014.1 55 6E−49 98 pfam11138 Protein of unknown function (DUF2911)
14 4 153 Hypothetical protein (Sphingobacterium) WP_021192491.1 88 8E−88 98 pfam13472 GDSL-like lipase/acylhydrolase family
15 3 85 Hypothetical protein (Sphingobacterium) WP_037526146.1 97 1E−48 99 ND ND
16 3 135 Alpha-l-arabinofuranosidase (Sphingobacterium) WP_045756399.1 100 1E−88 99 pfam06964 Alpha-l-arabinofuranosidase
17 3 144 Hypothetical protein (Sphingobacterium) KKX50961.1 100 5E−94 100 TIGR04056 TonB-linked outer membrane protein, SusC/RagA family
18 3 153 Hypothetical protein (Sphingobacterium) WP_045755931.1 62 1E−52 86 ND ND
19 3 162 Pyruvate dehydrogenase (Sphingobacterium) WP_021192396.1 100 6E−102 99 TIGR01349 Pyruvate dehydrogenase
20 3 82 TonB-linked outer membrane protein (Sphingobacterium) WP_003012895.1 84 1E−21 70 TIGR04056 TonB-linked outer membrane protein, SusC/RagA family
21 3 137 Membrane protein (Klebsiella) WP_032728567.1 61 1E−48 98 PRK10554 Outer membrane porin protein C
22 3 122 Flagellin (Alicycliphilus) WP_013723065.1 100 3E−68 95 pfam00669 Bacterial flagellin
23 3 152 Porin (Serratia) WP_024529021.1 100 5E−99 96 pfam02264 LamB porin, maltoporin
24 3 157 Hypothetical protein (Sphingobacterium) KKX47093.1 87 2E−83 99 TIGR04056 TonB-linked outer membrane protein, SusC/RagA family
25 3 162 Superoxide dismutase (Flavobacterium) WP_041515972.1 93 2E−95 92 pfam00080 Copper/zinc superoxide dismutase
26 3 140 Hypothetical protein (Sphingobacterium) WP_045754573.1 100 2E−84 99 COG1729 Periplasmic TolA-binding protein (function unknown)
27 3 90 Flagellar motor protein MotB (Sphingobacterium) WP_038696344.1 82 2E−36 86 ND ND
28 3 97 Pyruvate dehydrogenase (Sphingobacterium) WP_045753967.1 100 6E−60 100 pfam00198 2-oxoacid dehydrogenases acyltransferase
29 3 71 Pullulanase (Klebsiella) EHS90708.1 100 4E−41 96 TIGR02103 Alpha-1,6-glucosidases, pullulanase-type
30 3 162 Hypothetical protein (Sphingobacterium) WP_021191620.1 100 4E−110 99 pfam07980 SusD family
31 3 82 Hypothetical protein (Acinetobacter) WP_005399834.1 100 1E−50 99 pfam03724 META domain; unknown function, some are secreted
32 3 83 Hypothetical protein (Acinetobacter) WP_004981111.1 86 2E−35 86 ND ND
33 3 145 Hypothetical protein (Sphingobacterium) KKX46588.1 100 4E−85 93 TIGR04056 TonB-linked outer membrane protein, SusC/RagA family
34 3 151 Pullulanase (Klebsiella) EHS90708.1 100 2E−100 95 TIGR02103 Alpha-1,6-glucosidases, pullulanase-type
35 3 156 PhoH-like ATP-binding protein (Salmonella) WP_001731743.1 100 3E−106 100 COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase
36 3 83 Gliding motility protein RemB (Sphingobacterium) WP_038696674.1 97 4E−37 81 ND ND
37 3 151 Aldose 1-epimerase (Sphingobacterium) KKX49924.1 100 6E−97 95 cd09019 Galactose mutarotase_like
38 3 154 Membrane protein (Sphingobacterium) WP_038697956.1 100 1E−95 95 TIGR04056 TonB-linked outer membrane protein, SusC/RagA family
  1. #PS number of protein sequences, LSR length of representative sequence in amino acids, COV query coverage, ND not identified