Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A

Table 5 Transcriptional patterns of C1A cellulosomal genes on various substrates

Transcripts	Number of transcripts when grown on
Transcripts	Alfalfa	Energy cane	Corn stover	Sorghum
Cellulosomal transcripts
Significantly upregulated^a	52	53	56	47
Upregulated^b	24	23	31	28
Downregulated^c	32	29	34	22
Significantly downregulated^d	47	49	54	41
No change^e	141	143	121	158

^aSignificantly upregulated refers to the number of transcripts with a differential expression p value <0.01 as calculated by the nbinomTest function in the R package DESeq [44]
^bUpregulated refers to the number of transcripts with a differential expression p value between 0.01 and 0.1 as calculated by the nbinomTest function in the R package DESeQ [44]
^cDownregulated refers to the number of transcripts with a differential expression p value <0.01 as calculated by the nbinomTest function in the R package DESeq [44]
^dSignificantly downregulated refers to the number of transcripts with a differential expression p value between 0.01 and 0.1 as calculated by the nbinomTest function in the R package DESeq [44]
^eNo change refers to the number of transcripts with a differential expression p value >0.1 as calculated by the nbinomTest function in the R package DESeq [44]

ISSN: 2731-3654