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Table 3 List of the TRs predicted to orchestrate the transcriptional response during N starvation

From: Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii

Stage

Name

Description

Timestamp (min)

Trend

Predicted regulated modules

Early

Cre13.g573000

SET domain methyltransferase

12

Down

40, 113, 162, 197, 127

BLZ8

Basic region leucine zipper

13

Down

105, 121

RWP11

RWP-RK TF

15

Up

150

Cre17.g746547

bZIP TF

15

Down

105, 121

Mid

CGL86

Nuclear inhibitor of protein phosphatase-1

26

Down

129, 130, 99, 172, 13, 45, 82, 148

NAT11

Acetyltransferase (GNAT)

30

Down

129

RWP1

RWP-RK domain protein

36

Up

130, 99, 13, 45, 82, 148

NAT1

Acetyltransferase (GNAT)

37

Down

200, 178, 93, 174

NRR1

SBP domain

44

Up

82, 67

RWP4

RWP-RK domain-containing protein

48

Up

193, 98, 35, 37, 72, 170, 45, 142, 175, 59, 99, 53, 87, 27, 95

GSM1

Gamete-specific minus 1

50

Up

193, 98, 35, 37, 166, 172, 45, 175, 99, 59, 67, 53, 54, 87, 27, 149

Cre12.g523000

Zinc finger CCCH domain containing protein

62

Up

149, 193, 98, 35, 37, 102, 170, 172, 45, 142, 175, 99, 59, 67, 53, 54, 87, 185, 27, 211, 95

Late

CGL107

Histone-like transcription factor (CBF/NF-Y)

109

Up

193, 8, 9, 141, 50, 24, 154, 59, 92, 158

Cre09.g386753

DNA binding protein S1FA

109

Down

98, 35, 166, 172, 175, 67, 149, 27

NAB1

Nucleic acid binding protein

146

Down

33, 34, 133, 104, 76, 144, 136, 210, 21, 151, 57, 186

NAT31

Acetyltransferase (GNAT)

371

Up

104, 136, 133

Cre03.g152150

Zinc finger C2H2 type domain

418

Down

129, 13

  1. Seventeen differentially expressed TRs during N starvation have a predicted significant influence on at least one transcriptional module. TR name and description, first time point of differential expression (timestamp) and predicted influenced modules are indicated