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Table 1 MIPS functional catalog category classification of all the genes specifically up-regulated in pkaA deletion strain

From: Aspergillus nidulans protein kinase A plays an important role in cellulase production

Functional category

Genes

p value

01 Metabolism

  

 01.01.03.01.01 biosynthesis of glutamine

3

0.0382

 01.01.09.04 metabolism of phenylalanine

17

0.0260

 01.01.09.04.01 biosynthesis of phenylalanine

11

0.0340

 01.01.11.02.02 degradation of isoleucine

5

0.0171

 01.01.11.03.02 degradation of valine

5

0.0232

 01.01.11.04 metabolism of leucine

11

0.0058

 01.01.11.04.02 degradation of leucine

9

0.0033

 01.02 nitrogen, sulfur and selenium metabolism

43

0.0389

 01.05.03 polysaccharide metabolism

41

0.0114

 01.05.06 C-2 compound and organic acid metabolism

9

0.0368

 01.06.05 fatty acid metabolism

39

0.0035

 01.20.01.05 metabolism of sugar alcohols

4

0.0047

 01.20.01.09 metabolism of aminoglycoside antibiotics

3

0.0238

 01.20.07 metabolism of propionic acid derivatives

2

0.0373

02 Energy

  

 02.01 glycolysis and gluconeogenesis

18

0.0419

 02.07 pentose-phosphate pathway

12

0.0219

 02.16 fermentation

28

0.0413

 02.16.01 alcohol fermentation

10

0.0230

 02.16.03 lactate fermentation

6

0.0069

 02.25 oxidation of fatty acids

22

0.0145

14 Protein fate (folding, modification, destination)

  

 14.07.11.01 autoproteolytic processing

7

0.0128

 14.13 protein/peptide degradation

64

0.0002

 14.13.01 cytoplasmic and nuclear protein degradation

40

0.0124

 14.13.04 lysosomal and vacuolar protein degradation

14

0.0073

 14.13.04.02 vacuolar protein degradation

9

0.0097

18 Regulation metabolism and protein function

  

 18.02.10 regulation of channel activity

2

0.03735

20 Cellular transp., transp. facilities and routes

 

 20.01.03 C-compound and carbohydrate transport

44

0.03095

 20.09.18 cellular import

73

0.01043

 20.09.18.07 non-vesicular cellular import

44

0.00332

 20.09.03 peroxisomal transport

10

0.00743

30 Cellular communication/signal transduct. mechanism

 

 30.01.05.03 protease mediated signal transduction

2

0.03735

 30.01.09.03 Ca2+-mediated signal transduction

8

0.00950

32 Cell rescue, defense and virulence

  

 32.01.04 pH stress response

3

0.03822

 32.01.05 heat-shock response

11

0.00852

 32.07.03 detoxification by modification

11

0.03405

 32.07.07 oxygen and radical detoxification

11

0.03405

 32.07.07.03 glutathione conjugation reaction

4

0.04179

 32.07.07.07 superoxide metabolism

4

0.03061

34 Interaction with the environment

  

 34.01.01.01 homeostasis of metal ions (Na, K, Ca, etc.)

29

0.03479

38 Transposable elements, viral, plasmid protein

  

 38.07 proteins necessary for transposon movement

4

0.01412

42 Biogenesis of cellular components

  

 42.19 peroxisome

14

0.00119

 42.25 vacuole or lysosome

11

0.02263