Table 1 Distribution of SNPs in different genomic regions in 48 sorghum accessions
Genotype | Type | Racial type | Geographic origin | Total SNP numbers | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
All | Intergenic | 5′ UTR | Intronic | Non-syn | Syn | 3′ UTR | ||||
BTx623 | I | Complex | USA | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Malisor84-7 | I | Complex | Mali | 347707 | 284944 | 2079 | 36036 | 7834 | 7175 | 8261 |
ICSV745 | I | Complex | India | 906800 | 762772 | 6166 | 81888 | 17476 | 15943 | 19300 |
EarlyHegari | L | Caudatum | Sudan | 910090 | 748915 | 6893 | 90114 | 20375 | 19267 | 20719 |
Cherekit | L | Caudatum | Ethiopia | 932505 | 763491 | 7179 | 96419 | 19765 | 18989 | 22799 |
SC103-14E | L | Guinea-Caudatum | South Africa | 800708 | 657087 | 5589 | 82356 | 17216 | 15899 | 19275 |
Macia | I | Caudatum | Mozambique | 776904 | 632772 | 5698 | 84057 | 16103 | 15199 | 19937 |
SC108-14E | L | Caudatum | Ethiopia | 738736 | 600093 | 5969 | 78205 | 16647 | 15926 | 18758 |
SC237-14E | L | Caudatum | Sudan | 865874 | 708878 | 7299 | 87805 | 18947 | 18174 | 21154 |
B923296 | I | Complex | Australia | 652758 | 537078 | 4312 | 66567 | 13219 | 12591 | 16395 |
B963676 | I | Complex | Australia | 646947 | 521677 | 5095 | 71404 | 14277 | 14007 | 17587 |
M35-1 | L | Durra | India | 799673 | 659631 | 5629 | 81167 | 15727 | 15239 | 19067 |
R931945-2-2 | I | Complex | Australia | 1240958 | 1045243 | 10365 | 109678 | 22904 | 21989 | 26306 |
SC170-6-8 | L | Caudatum | Ethiopia | 834928 | 698227 | 6107 | 77492 | 16224 | 15499 | 18180 |
SC326-6 | L | Caudatum-Bicolor | Ethiopia-USA | 862389 | 702263 | 6869 | 91952 | 18410 | 17529 | 21739 |
SC56-14E | L | Caudatum-Nigricans | Sudan | 963728 | 788668 | 7831 | 98457 | 21451 | 19783 | 23541 |
SC62-14E | L | Complex | Kenya | 996081 | 803234 | 8304 | 108872 | 23186 | 21516 | 26629 |
E-Tian | I | Kafir | China | 434744 | 323422 | 8666 | 45605 | 19683 | 20023 | 14334 |
Rio | I | Kafir | USA | 824373 | 660153 | 7410 | 92526 | 19751 | 18890 | 21916 |
SS79 | I | Kafir | Ethiopia | 1291250 | 1048752 | 16348 | 122623 | 34079 | 32586 | 30973 |
IS8525 | L | Kafir | Ethiopia | 941482 | 777365 | 7926 | 92487 | 19527 | 18210 | 22188 |
Keller | I | Complex | USA | 335625 | 238622 | 4096 | 50617 | 13143 | 12560 | 14148 |
RTx7000 | I | Kafir-Caudatum | USA | 1125422 | 943142 | 9873 | 102492 | 21075 | 19846 | 24795 |
IS3614-2 | L | Guinea | Nigeria | 1313068 | 1102724 | 8066 | 123657 | 22931 | 21749 | 29188 |
Karper669 | I | Complex | USA-Sudan | 1121780 | 935393 | 7839 | 106347 | 22061 | 20738 | 25193 |
PI563516 | I | Durra-Caudatum | Mali | 1014530 | 835382 | 8632 | 100645 | 20999 | 20101 | 24679 |
QL12 | I | Complex | Australia | 1037252 | 860948 | 7376 | 101401 | 20297 | 18933 | 24245 |
IS9710 | L | Caudatum | Sudan | 961866 | 783299 | 6937 | 102930 | 20584 | 20071 | 24013 |
KS115 | I | Durra-Caudatum | USA | 937449 | 767552 | 4773 | 102892 | 17830 | 16454 | 24350 |
Ji2731 | L | Caudatum | China | 538989 | 395020 | 10246 | 60269 | 24847 | 25652 | 19250 |
AI4 | I | Complex | China | 1160161 | 963494 | 7757 | 112978 | 22722 | 22193 | 26553 |
LR9198 | I | Complex | China | 1253170 | 1039361 | 9778 | 121486 | 24483 | 23565 | 29609 |
BTx642Â | L | Durra | Ethiopia | 1524769 | 1287876 | 12862 | 132322 | 27541 | 26021 | 32749 |
SC35C-14E | L | Durra | Ethiopia | 1228814 | 1028072 | 7766 | 115689 | 23108 | 22143 | 27565 |
SC23-14E | L | Durra | Ethiopia | 1362098 | 1146377 | 9130 | 123135 | 24986 | 23680 | 29949 |
Yik.solate | L | Durra | Ethiopia | 1118066 | 933012 | 5181 | 116030 | 17059 | 15380 | 27540 |
IBC/E-38432 | L | Durra | Ethiopia | 1715354 | 1430193 | 11247 | 167795 | 30353 | 29061 | 40485 |
PI585749 | L | Durra-Bicolor | Mali | 1446371 | 1210097 | 11321 | 133531 | 27449 | 25917 | 32590 |
PI330272 | W | Drummondii | Ethiopia | 1501312 | 1242394 | 10899 | 147465 | 30448 | 29048 | 35194 |
Zengada | W | Weedy | Ethiopia | 1581684 | 1315478 | 10824 | 155882 | 28624 | 27247 | 37720 |
Kilo | W | Weedy | Ethiopia | 1267760 | 1047467 | 5627 | 137344 | 21473 | 19909 | 31449 |
Greenleaf | W | Weedy | USA | 1522107 | 1268287 | 10468 | 145993 | 29247 | 28130 | 34204 |
PI226096 | W | Weedy | Kenya | 1956801 | 1641444 | 16255 | 179268 | 35250 | 33730 | 43508 |
PI525695 | M | Margaritiferum | Mali | 1964025 | 1628455 | 12730 | 197292 | 36202 | 35569 | 46286 |
PI586430 | M | Margaritiferum | Sierra Leone | 1938008 | 1594348 | 13766 | 198477 | 38894 | 38431 | 46271 |
PI300119 | W | Verticilliflorum | South Africa | 2995879 | 2482294 | 26648 | 290919 | 56213 | 56617 | 71315 |
AusTRCF317961 | W | Verticilliflorum | Australia | 2003360 | 1625419 | 12596 | 226288 | 38953 | 39283 | 52566 |
Sorpr369-1 | P | Propinquum | – | 5200279 | 3971685 | 58105 | 713492 | 124517 | 141591 | 163430 |
Sorpr369-2 | P | Propinquum | – | 4993948 | 3794524 | 53315 | 704812 | 118631 | 135432 | 160696 |