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Table 1 Distribution of SNPs in different genomic regions in 48 sorghum accessions

From: SorGSD: a sorghum genome SNP database

Genotype Type Racial type Geographic origin Total SNP numbers
All Intergenic 5′ UTR Intronic Non-syn Syn 3′ UTR
BTx623 I Complex USA 0 0 0 0 0 0 0
Malisor84-7 I Complex Mali 347707 284944 2079 36036 7834 7175 8261
ICSV745 I Complex India 906800 762772 6166 81888 17476 15943 19300
EarlyHegari L Caudatum Sudan 910090 748915 6893 90114 20375 19267 20719
Cherekit L Caudatum Ethiopia 932505 763491 7179 96419 19765 18989 22799
SC103-14E L Guinea-Caudatum South Africa 800708 657087 5589 82356 17216 15899 19275
Macia I Caudatum Mozambique 776904 632772 5698 84057 16103 15199 19937
SC108-14E L Caudatum Ethiopia 738736 600093 5969 78205 16647 15926 18758
SC237-14E L Caudatum Sudan 865874 708878 7299 87805 18947 18174 21154
B923296 I Complex Australia 652758 537078 4312 66567 13219 12591 16395
B963676 I Complex Australia 646947 521677 5095 71404 14277 14007 17587
M35-1 L Durra India 799673 659631 5629 81167 15727 15239 19067
R931945-2-2 I Complex Australia 1240958 1045243 10365 109678 22904 21989 26306
SC170-6-8 L Caudatum Ethiopia 834928 698227 6107 77492 16224 15499 18180
SC326-6 L Caudatum-Bicolor Ethiopia-USA 862389 702263 6869 91952 18410 17529 21739
SC56-14E L Caudatum-Nigricans Sudan 963728 788668 7831 98457 21451 19783 23541
SC62-14E L Complex Kenya 996081 803234 8304 108872 23186 21516 26629
E-Tian I Kafir China 434744 323422 8666 45605 19683 20023 14334
Rio I Kafir USA 824373 660153 7410 92526 19751 18890 21916
SS79 I Kafir Ethiopia 1291250 1048752 16348 122623 34079 32586 30973
IS8525 L Kafir Ethiopia 941482 777365 7926 92487 19527 18210 22188
Keller I Complex USA 335625 238622 4096 50617 13143 12560 14148
RTx7000 I Kafir-Caudatum USA 1125422 943142 9873 102492 21075 19846 24795
IS3614-2 L Guinea Nigeria 1313068 1102724 8066 123657 22931 21749 29188
Karper669 I Complex USA-Sudan 1121780 935393 7839 106347 22061 20738 25193
PI563516 I Durra-Caudatum Mali 1014530 835382 8632 100645 20999 20101 24679
QL12 I Complex Australia 1037252 860948 7376 101401 20297 18933 24245
IS9710 L Caudatum Sudan 961866 783299 6937 102930 20584 20071 24013
KS115 I Durra-Caudatum USA 937449 767552 4773 102892 17830 16454 24350
Ji2731 L Caudatum China 538989 395020 10246 60269 24847 25652 19250
AI4 I Complex China 1160161 963494 7757 112978 22722 22193 26553
LR9198 I Complex China 1253170 1039361 9778 121486 24483 23565 29609
BTx642  L Durra Ethiopia 1524769 1287876 12862 132322 27541 26021 32749
SC35C-14E L Durra Ethiopia 1228814 1028072 7766 115689 23108 22143 27565
SC23-14E L Durra Ethiopia 1362098 1146377 9130 123135 24986 23680 29949
Yik.solate L Durra Ethiopia 1118066 933012 5181 116030 17059 15380 27540
IBC/E-38432 L Durra Ethiopia 1715354 1430193 11247 167795 30353 29061 40485
PI585749 L Durra-Bicolor Mali 1446371 1210097 11321 133531 27449 25917 32590
PI330272 W Drummondii Ethiopia 1501312 1242394 10899 147465 30448 29048 35194
Zengada W Weedy Ethiopia 1581684 1315478 10824 155882 28624 27247 37720
Kilo W Weedy Ethiopia 1267760 1047467 5627 137344 21473 19909 31449
Greenleaf W Weedy USA 1522107 1268287 10468 145993 29247 28130 34204
PI226096 W Weedy Kenya 1956801 1641444 16255 179268 35250 33730 43508
PI525695 M Margaritiferum Mali 1964025 1628455 12730 197292 36202 35569 46286
PI586430 M Margaritiferum Sierra Leone 1938008 1594348 13766 198477 38894 38431 46271
PI300119 W Verticilliflorum South Africa 2995879 2482294 26648 290919 56213 56617 71315
AusTRCF317961 W Verticilliflorum Australia 2003360 1625419 12596 226288 38953 39283 52566
Sorpr369-1 P Propinquum 5200279 3971685 58105 713492 124517 141591 163430
Sorpr369-2 P Propinquum 4993948 3794524 53315 704812 118631 135432 160696
  1. I improved variety, L landrace, W wild/weedy, M margaritiferum, P Sorghum propinquum