Skip to main content

Table 2 Distribution of major effect SNPs in different genic sites and regions in 48 sorghum accessions

From: SorGSD: a sorghum genome SNP database

Genotype Type Racial type Geographic origin Start codon Stop codon Splice sites
Gain Lost Variant Gain Lost Retain Donor Acceptor Region
BTx623 I Complex USA 0 0 0 0 0 0 0 0 0
Malisor84-7 I Complex Mali 380 16 1 130 39 10 28 32 742
ICSV745 I Complex India 1084 45 9 246 64 21 69 74 1643
EarlyHegari L Caudatum Sudan 1281 35 12 282 81 18 69 69 1960
Cherekit L Caudatum Ethiopia 1283 42 12 291 68 18 66 72 2011
SC103-14E L Guinea-Caudatum South Africa 1014 39 8 244 72 20 51 75 1763
Macia I Caudatum Mozambique 996 38 5 239 62 26 51 60 1661
SC108-14E L Caudatum Ethiopia 1054 42 9 230 60 20 51 68 1604
SC237-14E L Caudatum Sudan 1242 50 6 282 79 22 57 72 1807
B923296 I Complex Australia 770 26 9 199 53 19 53 72 1395
B963676 I Complex Australia 962 30 5 192 62 18 57 64 1510
M35-1 L Durra India 1048 39 5 246 68 21 66 74 1646
R931945-2-2 I Complex Australia 1703 74 15 331 81 29 88 110 2042
SC170-6-8 L Caudatum Ethiopia 1065 44 5 245 69 27 55 58 1631
SC326-6 L Caudatum-Bicolor Ethiopia-USA 1220 34 10 266 82 26 62 96 1831
SC56-14E L Caudatum-Nigricans Sudan 1433 40 10 328 78 24 58 80 1946
SC62-14E L Complex Kenya 1455 38 10 295 99 28 71 94 2250
E-Tian I Kafir China 1430 41 14 228 65 25 57 66 1085
Rio I Kafir USA 1273 47 16 259 72 21 65 75 1899
SS79 I Kafir Ethiopia 2602 78 21 419 116 37 102 130 2384
IS8525 L Kafir Ethiopia 1353 46 17 261 69 24 64 87 1858
Keller I Complex USA 750 27 7 212 48 12 36 45 1302
RTx7000 I Kafir-Caudatum USA 1605 47 15 284 93 32 78 97 1948
IS3614-2 L Guinea Nigeria 1421 48 13 358 95 37 83 112 2586
Karper669 I Complex USA-Sudan 1362 52 11 301 93 24 63 94 2209
PI563516 I Durra-Caudatum Mali 1427 53 13 298 86 27 62 94 2032
QL12 I Complex Australia 1321 45 10 313 79 25 64 98 2097
IS9710 L Caudatum Sudan 1265 38 10 301 85 21 73 78 2161
KS115 I Durra-Caudatum USA 900 35 12 270 77 33 71 89 2111
Ji2731 L Caudatum China 1666 52 13 265 76 23 74 62 1474
AI4 I Complex China 1416 45 12 291 78 24 90 99 2409
LR9198 I Complex China 1735 47 10 331 95 27 103 107 2433
BTx642  L Durra Ethiopia 2114 75 23 363 107 38 93 99 2486
SC35C-14E L Durra Ethiopia 1402 48 16 317 89 32 84 94 2389
SC23-14E L Durra Ethiopia 1587 55 14 384 107 31 87 108 2468
Yik.solate L Durra Ethiopia 990 25 8 249 67 28 79 90 2328
IBC/E-38432 L Durra Ethiopia 1965 70 14 442 113 45 108 121 3342
PI585749 L Durra-Bicolor Mali 1930 65 17 388 109 43 95 130 2689
PI330272 W Drummondii Ethiopia 1865 56 11 458 123 49 100 148 3054
Zengada W Weedy Ethiopia 1864 59 13 413 111 45 95 147 3162
Kilo W Weedy Ethiopia 1058 35 5 294 73 32 85 106 2803
Greenleaf W Weedy USA 1871 60 16 411 122 34 110 116 3038
PI226096 W Weedy Kenya 2767 76 16 495 145 48 148 148 3503
PI525695 M Margaritiferum Mali 2318 73 15 524 135 46 136 162 4082
PI586430 M Margaritiferum Sierra Leone 2525 82 15 562 144 47 138 175 4133
PI300119 W Verticilliflorum South Africa 4441 132 29 786 204 90 211 224 5756
AusTRCF317961 W Verticilliflorum Australia 2278 80 16 521 145 53 163 185 4814
Sorpr369-1 P Propinquum 9859 249 42 1519 378 236 407 481 14288
Sorpr369-2 P Propinquum 9169 241 41 1437 359 240 405 465 14181
  1. I improved variety; L landrace; W wild/weedy; M margaritiferum; P Sorghum propinquum