Table 1 Occurrence of SNPs in the causative genes GLO1, HAA1, VMA7, DOT5, and CUP2 in a set of 28 yeast strains of which the complete genome sequence is known
GLO1 | HAA1 | |||||||
|---|---|---|---|---|---|---|---|---|
ORF | ORF | ORF | ORF | ORF | ORF | ORF | ORF | |
964 | 106 | 242 | 592 | 694 | 1025 | 1091 | 1130 | |
ER18 | A | C | T | G | A | G | TC | T |
16D | G | T | C | A | G | A | AT | C |
S288C | A | C | C | A | G | A | AT | C |
AWRI1631 | G | T | C | A | G | A | AT | C |
AWRI796 | G | T | C | A | G | A | AT | C |
BY4741 | A | C | C | A | G | A | AT | C |
BY4742 | A | C | C | A | G | A | AT | C |
CBS7960 | G | C | C | A | G | A | AT | C |
CEN.PK113 | A | C | C | A | G | A | AT | C |
CLIB215 | G | T | C | A | G | A | AT | C |
EC1118 | G | T | C | A | G | A | AT | C |
EC9-8 | G | T | C | A | G | A | AT | C |
FL100 | A | C | C | A | G | A | AT | C |
FostersB | G | C | -a | – | – | R | WY | Y |
FostersO | G | C | – | – | – | A | TC | C |
JAY291 | G | C | C | G | G | A | TC | C |
Kyokai7 | A | C | T | G | A | G | TC | T |
LalvinQA23 | G | – | – | – | – | – | WY | C |
PW5 | A | C | C | G | A | A | TC | T |
RM11-1a | G | T | C | A | G | A | AT | C |
Sigma1278b | A | C | C | A | G | A | AT | C |
T7 | A | T | G | A | G | TC | T | |
UC5 | A | C | C | G | A | G | TC | T |
VL3 | – | T | – | A | G | A | AT | C |
Vin13 | G | T | C | R | G | A | WY | C |
W303 | A | C | C | A | G | A | AT | C |
YJM269 | A | C | C | G | A | G | TC | T |
YJM789 | A | C | C | G | A | G | TC | T |
YPS163 | A | C | C | G | A | G | TC | T |
ZTW1 | A | T | T | G | A | A | TC | T |
VMA7 | |||||||
|---|---|---|---|---|---|---|---|
ORF | ORF | Prom. | Prom. | Prom. | Prom. | Prom. | |
1259 | 1517 | −61 | −67 | −110 | −139 | −291 | |
ER18 | C | G | G | C | G | T | G |
16D | A | A* | T | T | C | A | A |
S288C | A | G | T | T | C | A | A |
AWRI1631 | A | G | T | T | C | A | A |
AWRI796 | A | G | T | T | C | A | A |
BY4741 | A | G | T | T | C | A | A |
BY4742 | A | G | T | T | C | A | A |
CBS7960 | A | G | T | T | C | A | A |
CEN.PK113 | A | G | T | T | C | A | A |
CLIB215 | A | G | T | T | C | A | A |
EC1118 | A | G | T | T | C | A | A |
EC9-8 | A | G | T | T | C | A | A |
FL100 | A | G | T | T | C | A | A |
FostersB | M | G | T | T | C | A | A |
FostersO | C | G | T | T | C | A | A |
JAY291 | A | G | T | T | C | A | A |
Kyokai7 | C | G | G | C | G | T | G |
LalvinQA23 | A | G | C | T | T | A | A |
PW5 | C | G | T | C | G | A | A |
RM11-1a | A | G | T | T | C | A | A |
Sigma1278b | A | G | T | T | C | A | A |
T7 | C | G | T | C | G | A | A |
UC5 | C | G | G | C | G | T | T |
VL3 | A | G | T | T | C | A | G |
Vin13 | A | G | T | T | C | A | A |
W303 | A | G | T | T | C | A | A |
YJM269 | C | G | G | C | G | A | A |
YJM789 | C | G | T | T | C | A | A |
YPS163 | – | G | T | C | G | A | T |
ZTW1 | C | G | G | C | G | T | G |
DOT5 | CUP2 | |||
|---|---|---|---|---|
ORF | ORF | ORF | ORF | |
25 | 463 | 361 | 497 | |
ER18 | G | C | G | T |
16D | A | T | A | C |
S288C | A | C | A | C |
AWRI1631 | A | T | A | C |
AWRI796 | A | C | A | C |
BY4741 | A | C | A | C |
BY4742 | A | T | A | C |
CBS7960 | A | C | A | C |
CEN.PK113 | A | T | A | C |
CLIB215 | A | T | A | C |
EC1118 | A | T | A | C |
EC9-8 | A | C | A | C |
FL100 | A | C | A | C |
FostersB | A | – | R | C |
FostersO | A | T | R | C |
JAY291 | A | T | A | C |
Kyokai7 | G | C | G | T |
LalvinQA23 | A | – | A | C |
PW5 | A | C | G | T |
RM11-1a | A | T | A | C |
Sigma1278b | G | C | A | C |
T7 | A | C | G | T |
UC5 | A | T | G | T |
VL3 | G | C | A | C |
Vin13 | A | T | A | C |
W303 | A | T | A | C |
YJM269 | A | C | G | T |
YJM789 | A | C | A | C |
YPS163 | A | T | G | T |
ZTW1 | G | C | G | T |