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Table 4 Oligonucleotides used for PCR amplifications

From: Construction of a restriction-less, marker-less mutant useful for functional genomic and metabolic engineering of the biofuel producer Clostridium acetobutylicum

Primer name

Oligonucleotide sequence

PKD4.1

ctggcgccctgagtgcttgcggcagcgtgagggg

PKD4.2

agcccggggatctcatgctggagttcttcgccc

FRT-MLSR-F

tacaggccttgagcgattgtgtaggctggagc

FRT-MLSR-R

aacaggcctgggatgtaacgcactgagaagccc

PCONSAccI

ccggggtaccgtcgacctgcagcc

PCONSEcoRI

gaattccgcgagctcggtacccggc

ORI3-D

ccatcgatgggggtcatgcatcaatactatcccc

ORI4-R

gcttccctgttttaatacctttcgg

FLP1-D

aaaaggatccaaaaggagggattaaaatgccacaatttggtatattatgtaaaacaccacct

FLP1-R

aaatggcgccgcgtacttatatgcgtctatttatgtaggatgaaaggta

REP-UPP-F

aaaacagctgggaggaatgaaataatgagtaaagttacac

REP-UPP-R

aaaacagctgttattttgtaccgaataatctatctccagc

CAC 1

aaaggatccatgcacactcataaatttactgtaggaagtctg

CAC 2

ggggaggcctaaaaaggggggtcccaaataatatttgccatagtaaccacc

CAC 3

ccccctttttaggcctcccctcgaacttattagaatgattaagattccgg

CAC 4

aaaggatcctcattaaatttcctccattttaagcctgtc

CAC 0

gtgatataattttcctttaaatggaggaggatctg

CAC 5

gccgttaatagacattataattccattggc

CAC-D

gaattcttaaaaatatttggatcattaagcgg

CAC-R

gttgtattggaatctttgttattatttctccc

UPP 1

aaaaggatcctcctgatctattaattcttgatgaaccc

UPP 2

ggggaggcctaaaaagggggattgcataaataaaaagggctgaaaaataaatttcag

UPP 3

ccccctttttaggcctccccttatttcattcctccattgtattttttttctatttg

UPP 4

aaaaggatccgctattatgaataggttaaataagtcagctgg

UPP 0

aatacaagcaaagagaataggctatgtgcc

UPP 5

aatacaagcaaagagaataggctatgtgcc

UPP-D

ggcatatgaagtaacaagagaaatgcagc

UPP-R

ataatctatctccagcatctccaagacc

RM3535 1

aaaaggatccgcagctttctggaaggactacggcg

RM3535 2

ggggaggcctaaaaagggggcatttacttatggtacggttcacccc

RM3535 3

ccccctttttaggcctccccgtctttaaaaagtaatttatcaaaggcatcaaggc

RM3535 4

aaaaggatccctaactctctaaacgttacaatagtaatgcgc

RM3535 0

cacattgtcatttataaaagtccctaggg

RM3535 5

gtagtaattccaacttcaactcttgccac

RM3535-D

cttagaatagctgatattgcttgcgg

RM3535-R

agcatctctcttaatgattctccgg

CTF1

aaaaggatcccagacactataatagctttaggtggtacccc

CTF2

ggggaggcctaaaaagggggattataaaaagtagttgaaatatgaaggtttaaggttg

CTF3

ccccctttttaggcctccccatatccaatgaacttagacccatggctg

CTF4

aaaaggatccgtgttataatgtaaatataaataaataggactagaggcg

CTF0

taccaccttctttcacgcttggctgcgg

CTF5

tatttaaagaggcattatcaccagagcg

LDH1

aaaaggatccgctttaaaatttggaaagaggaagttgtg

LDH2

ggggaggcctaaaaagggggttagaaatctttaaaaatttctctatagagcccatc

LDH3

ccccctttttaggcctccccggtaaaagacctaaactccaagggtggaggctaggtc

LDH4

aaaaggatcccccattgtggagaatattccaaagaagaaaataattgc

LDH0

cagaaggcaagaatgtattaagcggaaatgc

LDH5

cttcccattatagctcttattcacattaagc

Cac3535-d-SpeI

aaaactagtatgaatgatattaaaatagctttgaaaaaattggttgac

Cac3535-R-BamHI

aaaaggatccctacaaattatatatatctgttaccaatgcctc

  1. Restriction sites are in italic