Table 1 Comparison of genome of P. ananatis Sd-1 with cellulolytic, ligninolytic bacteria, and other P. ananatis strains
Species | Genome size (bp) | Protein coding genes | Total CAZyb | % CAZya | GHsc | CEsd | CBMse | PLsf | AAsg |
|---|---|---|---|---|---|---|---|---|---|
P. ananatis Sd-1 | 4,927,500 | 4332 | 154 | 3.6 | 59 | 25 | 11 | 2 | 9 |
P. ananatis AJ13355 | 4,877,280 | 4222 | 108 | 2.6 | 52 | 4 | 9 | 0 | 1 |
P. ananatis LMG 2013 | 4,703,370 | 4076 | 105 | 2.6 | 51 | 4 | 8 | 0 | 1 |
P. ananatis LMG 5342 | 4,908,140 | 4345 | 108 | 2.5 | 55 | 4 | 10 | 0 | 0 |
P. ananatis PA13 | 4,867,130 | 4403 | 112 | 2.5 | 59 | 4 | 10 | 0 | 0 |
P. ananatis B1-9 | 5,105,560 | 4672 | 129 | 2.8 | 58 | 9 | 10 | 2 | 1 |
P. ananatis LMG 2665 | 4,633,915 | 4397 | 123 | 2.8 | 55 | 9 | 10 | 2 | 1 |
P. ananatis PA4 | 5,163,480 | 4662 | 131 | 2.8 | 60 | 7 | 13 | 2 | 1 |
P. ananatis BD442 | 4,798,550 | 4292 | 125 | 2.9 | 55 | 8 | 11 | 2 | 1 |
Pantoea sp. SL1_M5 | 4,924,830 | 4626 | 41 | 0.9 | 28 | 2 | 3 | 0 | 0 |
C. thermocellum ATCC 27405 | 3,843,300 | 3263 | 145 | 4.4 | 74 | 16 | 90 | 4 | 0 |
C. bescii DSM 6725 | 2,931,660 | 2662 | 88 | 3.3 | 49 | 6 | 18 | 3 | 0 |
Sphingobium sp. SYK-6 | 4,348,130 | 3939 | 70 | 1.7 | 21 | 1 | 3 | 0 | 0 |
E. lignolyticus SCF1 | 4,814,050 | 4350 | 94 | 2.1 | 42 | 5 | 7 | 0 | 0 |