Skip to main content

Advertisement

Table 5 Summary of hemicellulose-degrading proteins identified in the secretomes of four fungi

From: Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system

Species Accession no.a Familyb Predicted proteina Upc SignalPd
S. commune Main chain
 Schco3|2357273 GH2 β-mannosidase 2 Y
 Schco3|2174600 GH2 β-mannosidase 18 Y
 Schco3|2573073 GH10 β-1,4-xylanase 4 N
 Schco3|2252725 GH10 β-1,4-xylanase 2 Y
 Schco3|2599608 GH10, CBM1 β-1,4-xylanase 12 Y
 Schco3|2170032 GH11 endo-1,4-β-xylanase A 7 Y
 Schco3|103086 GH43 β-xylosidase 2 Y
 Schco3|2147860 GH74 xyloglucanase 5 Y
Side group
 Schco3|2159785 GH27 α-galactosidase 7 N
 Schco3|2310213 GH31 α-xylosidase 1 Y
 Schco3|2304995 GH35 β-galactosidase 15 Y
 Schco3|2669535 GH35 β-galactosidase 1 Y
 Schco3|110618 GH35 β-galactosidase 1 Y
 Schco3|2138893 GH35 β-galactosidase 13 Y
 Schco3|13761 GH35 β-galactosidase 5 N
 Schco3|2347041 GH43 α-l-arabinofuranosidase 9 Y
 Schco3|15661 GH43 α-l-arabinofuranosidase 4 N
 Schco3|2226774 GH43 α-l-arabinofuranosidase 3 N
 Schco3|2085606 GH51 α-l-arabinofuranosidase 3 N
 Schco3|108819 GH51, CBM4 α-l-arabinofuranosidase 4 Y
 Schco3|2167580 GH62 α-l-arabinofuranosidase 5 Y
 Schco3|1339154 GH115 α-glucuronidase 8 Y
 Schco3|2275054 CE1 acetyl xylan esterase 3 Y
 Schco3|2061511 CE1, CBM1 acetyl xylan esterase 2 N
 Schco3|2061509 CE1, CBM1 acetyl xylan esterase 2 Y
 Schco3|1161522 CE1, CBM17 feruloyl esterase 4 Y
 Schco3|2151545 CE1 esterase 2 N
 Schco3|2138510 CE15 glucuronoyl esterase 6 Y
P. chrysosporium Main chain
 Phchr2|1969118 GH3 β-xylosidase 5 Y
 Phchr2|2686185 GH5, CBM1 endo-1,4-β-mannanase 2 Y
 Phchr2|2972357 GH5, CBM1 endo-1,4-β-mannanase 2 Y
 Phchr2|2970250 GH10 endo-β-1,4-xylanase 6 Y
 Phchr2|138715 GH10, CBM1 endo-1,4-β-xylanase C 1 Y
 Phchr2|2970992 GH10, CBM1 endo-1,4-β-xylanase 4 Y
 Phchr2|134556 GH74, CBM1 oligoxyloglucan cellobiohydrolase 8 Y
Side group
 Phchr2|125033 GH27 α-galactosidase 5 Y
 Phchr2|2973689 GH43, CBM35 galactan 1,3-β-galactosidase 2 Y
 Phchr2|2305691 GH51, CBM4 α-l-arabinofuranosidase 4 N
 Phchr2|126075 CE1, CBM1 acetyl xylan esterase 1 Y
C. subvermispora Main chain
 Cersu1|107994 GH2 β-mannosidase 5 Y
 Cersu1|103229 GH2 β-mannosidase 2 N
 Cersu1|157432 GH10 endo-1,4-β-xylanase 5 Y
 Cersu1|116326 GH10 endo-1,4-β-xylanase A 4 Y
 Cersu1|67561 GH10, CBM1 endo-1,4-β-xylanase A 3 Y
Side group
 Cersu1|102094 GH27 α-galactosidase 4 N
 Cersu1|124631 GH27 α-galactosidase 2 Y
 Cersu1|110070 GH35 β-galactosidase 18 Y
 Cersu1|99896 GH51 α-l-arabinofuranosidase A 4 Y
 Cersu1|106199 GH95 α-l-fucosidase 3 Y
 Cersu1|106142 CE1, CBM1 acetyl xylan esterase 2 Y
G. trabeum Main chain
 Glotr1_1|115191 GH2 β-mannosidase 13 Y
 Glotr1_1|122002 GH3 β-xylosidase 16 Y
 Glotr1_1|114574 GH5 endo-β-mannanase 10 Y
 Glotr1_1|46499 GH10 endo-1,4-β-xylanase 19 N
 Glotr1_1|138785 GH10 β-1,4-xylanase 5 Y
 Glotr1_1|140289 GH10, CBM1 endo-1,4-β-xylanase 12 Y
 Glotr1_1|68887 GH74 oligoxyloglucan cellobiohydrolase 21 Y
Side group
 Glotr1_1|81012 GH1 β-galactosidase-like protein 23 Y
 Glotr1_1|117566 GH27 α-galactosidase 12 Y
 Glotr1_1|61165 GH29 α-l-fucosidase 10 N
 Glotr1_1|141329 GH31 α-xylosidase 29 Y
 Glotr1_1|119185 GH31 α-xylosidase 19 Y
 Glotr1_1|81512 GH35 β-galactosidase 24 N
 Glotr1_1|111095 GH35 β-galactosidase 37 Y
 Glotr1_1|69366 GH43, CBM6 galactan 1,3-β-galactosidase 10 Y
 Glotr1_1|134804 GH51 α-l-arabinofuranosidase 14 Y
 Glotr1_1|111463 GH51, CBM4 α-l-arabinofuranosidase 12 Y
 Glotr1_1|121308 GH115 α-glucuronidase 24 Y
 Glotr1_1|117128 CE1 acetyl xylan esterase 10 Y
 Glotr1_1|46545 CE15 glucuronoyl esterase 7 Y
  1. a Accession numbers and predicted proteins were obtained from the corresponding Joint Genome Institute (JGI) databases
  2. b Family information was obtained from the carbohydrate-active enzyme database (CAZy)
  3. c Unique peptides
  4. d Prediction of signal peptides was based on SignalP analysis