Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system

Ning Zhu; Jiawen Liu; Jinshui Yang; Yujian Lin; Yi Yang; Lei Ji; Meng Li; Hongli Yuan

doi:10.1186/s13068-016-0461-x

Table 8 Summary of oxidoreductases involved in lignin degradation identified in the secretomes of four fungi

From: Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system

Species	Accession no.^a	Family^b	Predicted protein^a	Up^c	SignalP^d
S. commune	Peroxide generation
	Schco3\|2106675	AA3	aryl-alcohol oxidase	11	Y
	Schco3\|2186806	AA3	glucose oxidase	14	Y
	Schco3\|13888	AA3	glucose oxidase	14	Y
	Schco3\|2443737	AA3	alcohol oxidase	9	N
	Schco3\|2110714	AA3	alcohol oxidase	3	Y
	Schco3\|1099997	AA3	alcohol oxidase	4	N
	Schco3\|1110525	AA5	copper radical oxidase	2	Y
	Schco3\|1133515	AA7	glucooligosaccharide oxidase	9	Y
	Schco3\|1149633	AA7	glucooligosaccharide oxidase	2	Y
	Iron reduction
	Schco3\|114791	AA3	cellobiose dehydrogenase	14	Y
	Schco3\|13527	AA6	1,4-benzoquinone reductase	5	Y
	Schco3\|2599696		ferric reductase	4	Y
P. chrysosporium	Ligninolysis
	Phchr2\|1719525	AA2	Ligninase B	4	Y
	Phchr2\|122202	AA2	Ligninase LG6	3	Y
	Phchr2\|1385954	AA2	Ligninase precursor	2	Y
	Phchr2\|1179466	AA2	Manganese peroxidase H3	5	Y
	Peroxide generation
	Phchr2\|11068	AA5	glyoxal oxidase precursor	4	Y
	Phchr2\|134241	AA5	copper radical oxidase variant A	3	Y
	Phchr2\|124009	AA5	copper radical oxidase	8	Y
	Iron reduction
	Phchr2\|11098	AA3	Cellobiose dehydrogenase	12	Y
C. subvermispora	Ligninolysis
	Cersu1\|108863	AA1	Laccase	3	Y
	Cersu1\|107141	AA2	manganese-dependent peroxidase	7	Y
	Cersu1\|22243	AA2	manganase peroxidase	3	Y
	Peroxide generation
	Cersu1\|107672	AA3	aryl-alcohol oxidase precursor	6	Y
	Cersu1\|121682	AA3	alcohol oxidase	5	N
	Cersu1\|106232	AA5	copper radical oxidase	1	Y
	Cersu1\|106640	AA5	copper radical oxidase	3	Y
	Iron reduction
	Cersu1\|69058	AA6	1,4-benzoquinone reductase	5	N
G. trabeum	Peroxide generation
	Glotr1_1\|81501	AA3	aryl-alcohol oxidase	13	Y
	Glotr1_1\|82487	AA3	aryl-alcohol oxidase-like protein	13	Y
	Glotr1_1\|74773	AA3	alcohol oxidase	11	Y
	Glotr1_1\|65654	AA5	glyoxal oxidase	8	Y
	Iron reduction
	Glotr1_1\|113732	AA3	cellobiose dehydrogenase	3	N

^a Accession numbers and predicted proteins were obtained from the corresponding Joint Genome Institute (JGI) databases
^b Family information was obtained from the carbohydrate-active enzyme database (CAZy)
^c Unique peptides
^d Prediction of signal peptides was based on SignalP analysis

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