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Table 1 General features of Penicillium echinulatum genome

From: Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass

Category Wild-type 2HH Mutant S1M29
Genome statistic
 Genome size (MB) 29.82 29.83
 Number of bases 29.821.618 29.827.032
 Number of ambiguous bases (N) 92.041 82.971
 Number of contigs 1018 1124
 n50 147,886 137,718
 n90 32,016 32,016
 GC % 50.5 50.5
 Number of predicted genes 8504 8552
 Average gene size 1686 1684
 Median gene size 1441 1442
 Average protein size (AA) 505 504
 Number of predicted exons 25.098 25.494
 Number of predicted introns 16,638 16,997
 Average number of exons per gene 3 3
 Average number of introns per gene 2 2
 Average exon size 514 507
 Average intron size 87 87
 Median intron size 73 23
 Intergenic size 15,484,048 15,422,613
 Intragenic size 14,337,570 14,404,419
 Number of introns in gene with largest splicing capacity 23 23
 Number of putative secreted proteins 649 649
 Number of predicted proteins with e value of e 5 or less 8157 8190
Genome read
 Number of reads 679.730.992 545.354.384
 Number of read pairs 339.865.496 272.677.192
 Number of bases 33.986.549.600 27.264.719.200