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Table 4 Identified pectin-degradation enzymes and spectrum counts in different carbon sources by wild-type 2HH and mutant S1M29 of Penicillium echinulatum at 96 h during submerged cultivation

From: Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass

Accession number Identified proteins CAZyme Organism MW (kDa) Secretionb Spectrum counta
2HH S1M29
Glu Gly SCB Cel Glu Gly SCB Cel
g4880 Pectin lyase PL1 Penicillium oxalicum 40 Y 0 0 0 1 12 0 0 0
g3609 Exo-α-l-1,5-arabinanase GH93 Penicillium oxalicum 44 Y 0 0 0 2 0 0 0 0
  1. aSecretomic analysis based on spectral counting. A quantitative analysis was conducted for samples grown on cellulose or SCB (mean of triplicates), while a semiquantitative analysis for samples grown on glucose or glycerol (one replicate) was performed. The complete protein reports are given in Additional file 3
  2. bThe secretion of each protein was verified by the softwares SignalP, SecretomeP and YLoc. When at least two of three softwares give a positive result the protein was considered secreted