Table 3 Enrichment of annotation terms in groups of genes significantly correlated cultivation parameters
From: Genome wide analysis of protein production load in Trichoderma reesei
Type | Cultivation parameter | Term | Count of genes | P value |
|---|---|---|---|---|
GO | Biomass i.e. CDW (g/l) | GO:0009987 cellular process BP | 426 | 0.00006 |
GO | Biomass i.e. CDW (g/l) | GO:0071704 organic substance metabolic process BP | 423 | 0.00137 |
GO | Biomass i.e. CDW (g/l) | GO:0044238 primary metabolic process BP | 415 | 0.00115 |
GO | Biomass i.e. CDW (g/l) | GO:0044237 cellular metabolic process BP | 387 | 0.00000 |
GO | Biomass i.e. CDW (g/l) | GO:0044260 cellular macromolecule metabolic process BP | 276 | 0.00082 |
GO | Biomass i.e. CDW (g/l) | GO:0009058 biosynthetic process BP | 255 | 0.00000 |
GO | Biomass i.e. CDW (g/l) | GO:1901576 organic substance biosynthetic process BP | 247 | 0.00000 |
GO | Biomass i.e. CDW (g/l) | GO:0044249 cellular biosynthetic process BP | 246 | 0.00000 |
GO | Biomass i.e. CDW (g/l) | GO:0019538 protein metabolic process BP | 224 | 0.00000 |
GO | Biomass i.e. CDW (g/l) | GO:0044267 cellular protein metabolic process BP | 193 | 0.00000 |
Class | Cellotriose mmol/(g CDW h) | Transport | 17 | 0.00034 |
GO | Cellotriose mmol/(g CDW h) | GO:0071702 organic substance transport BP | 13 | 0.00561 |
Class | Cellotriose mmol/(g CDW h) | Glycoside hydrolase | 10 | 0.00235 |
Class | Cellotriose mmol/(g CDW h) | Major facilitator superfamily | 9 | 0.00064 |
Cazy | Cellotriose mmol/(g CDW h) | Glycoside hydrolase | 9 | 0.00204 |
GO | Cellotriose mmol/(g CDW h) | GO:0008643 carbohydrate transport BP | 8 | 0.00008 |
Class | Cellotriose mmol/(g CDW h) | Cell cycle | 6 | 0.00514 |
Class | Cellotriose mmol/(g CDW h) | Cell growth and death | 6 | 0.00595 |
Interpro | Cellotriose mmol/(g CDW h) | IPR002198: Short-chain dehydrogenase/reductase SDR | 6 | 0.00784 |
Interpro | Cellotriose mmol/(g CDW h) | IPR010730: Heterokaryon incompatibility | 5 | 0.00014 |
Class | Extracellular protein g/(g CDW h) | Transport | 20 | 0.00226 |
GO | Extracellular protein g/(g CDW h) | GO:0005975 carbohydrate metabolic process BP | 18 | 0.00018 |
Interpro | Extracellular protein g/(g CDW h) | IPR011701: Major facilitator superfamily | 12 | 0.00083 |
Class | Extracellular protein g/(g CDW h) | Amino acid metabolism | 10 | 0.00171 |
Class | Extracellular protein g/(g CDW h) | Secreted | 10 | 0.00313 |
Interpro | Extracellular protein g/(g CDW h) | IPR010730: Heterokaryon incompatibility | 6 | 0.00015 |
Interpro | Extracellular protein g/(g CDW h) | IPR003663: Sugar/inositol transporter | 5 | 0.00189 |
Interpro | Extracellular protein g/(g CDW h) | IPR005828: Major facilitator, sugar transporter-like | 5 | 0.00551 |
Class | Glycerol mmol/(g CDW h) | Protein transport | 7 | 0.00224 |
Class | Glycerol mmol/(g CDW h) | Cell signalling | 5 | 0.00140 |