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Table 4 Enrichment of annotation terms in gene expression clusters

From: Genome wide analysis of protein production load in Trichoderma reesei

Type

Cluster

Term

Count of genes

P value

Interpro

1

IPR007274: Ctr copper transporter

4

0.00000

GO

1

GO:0006825 copper ion transport

4

0.00000

Class

1

Transport

4

0.00015

Class

5

Mitochondrial

6

0.00800

Class

5

Transmembrane

4

0.00208

Class

20

Metabolism

6

0.00511

Class

20

Transport

4

0.00544

Class

21

Amino acid metabolism

5

0.00019

Class

21

Carbohydrate metabolism

4

0.00050

Class

22

Glycoside hydrolase

9

0.00070

Class

22

Unknown

8

0.00070

Cazy

22

Glycosyltransferase

5

0.00159

GO

22

GO:0006629 lipid metabolic process lipid metabolic process

5

0.00830

Class

24

Metabolism

18

0.00141

GO

24

GO:0005975 carbohydrate metabolic process

11

0.00146

Class

24

Protein transport

8

0.00011

Class

24

Amino acid metabolism

5

0.00299

Class

24

Nucleasome

4

0.00016

Interpro

24

IPR013149: Alcohol dehydrogenase, C-terminal

4

0.00038

Interpro

24

IPR013154: Alcohol dehydrogenase, N-terminal

4

0.00046

GO

26

GO:0006629 lipid metabolic process

4

0.00143

GO

28

GO:0006810 transport

17

0.00003

GO

28

GO:0051234 establishment of localization

17

0.00003

Class

28

Metabolism

10

0.00937

GO

28

GO:0006820 anion transport

9

0.00000

GO

28

GO:0006865 amino acid transport

7

0.00000

GO

28

GO:0050790 regulation of catalytic activity

5

0.00028

Class

28

Amino acid metabolism

5

0.00036

Class

28

Major facilitator superfamily

5

0.00058

GO

28

GO:0051341 regulation of oxidoreductase activity

4

0.00067

Class

29

Transport

6

0.00040

GO

31

GO:0009058 biosynthetic process

27

0.00392

GO

31

GO:0044249 cellular biosynthetic process

26

0.00398

GO

31

GO:1901564 organonitrogen compound metabolic process

16

0.00008

GO

31

GO:0044281 small molecule metabolic process

15

0.00102

GO

31

GO:1901566 organonitrogen compound biosynthetic process

13

0.00002

GO

31

GO:0006520 cellular amino acid metabolic process

12

0.00005

GO

31

GO:0008652 cellular amino acid biosynthetic process

9

0.00001

Class

31

Translation

7

0.00151

Class

31

Ribosome

6

0.00085

GO

31

GO:1901605 alpha-amino acid metabolic process

6

0.00238

Class

31

Transcription

6

0.00519

GO

31

GO:1901607 alpha-amino acid biosynthetic process

5

0.00273

Class

31

Transcription factor

5

0.00983

Interpro

31

IPR012335: Thioredoxin_fold

4

0.00072

GO

31

GO:0006865 amino acid transport

4

0.00612

GO

31

GO:0015711 organic anion transport

4

0.00612

GO

31

GO:0015849 organic acid transport

4

0.00612

GO

31

GO:0046942 carboxylic acid transport

4

0.00612