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Table 3 Distribution of sequencing reads among different genomic locations

From: Transcriptome profiling of Camelina sativa to identify genes involved in triacylglycerol biosynthesis and accumulation in the developing seeds

 

Cs-14 (10–15 DAF)

Cs-21 (16–21 DAF)

Bio Rep 1

Bio Rep 2

Bio Rep 3

Mean ± SD

Bio Rep 1

Bio Rep 2

Bio Rep 3

Mean ± SD

Annotated exons

17.2 M (76 %)

17.5 M (76 %)

25.5 M (75 %)

20.0 ± 4.7

19.4 M (77 %)

19.2 M (75 %)

14.9 M (77 %)

17.8 ± 2.5

Annotated introns

3.3 M (14 %)

3.4 M (15 %)

4.8 M (14 %)

3.8 ± 0.8

3.6 M (14 %)

3.5 M (14 %)

2.7 M (14 %)

3.2 ± 0.4

Novel genes and exons

21,028 (0.4 %)

24,141 (0.4 %)

37,287 (0.5 %)

27,485 ± 8630

31,924 (0.5 %)

28,678 (0.4 %)

18,424 (0.4 %)

26,342 ± 7046

Intergenic

1.8 M (8 %)

1.8 M (7 %)

3.3 M (10 %)

2.3 ± 0.8

2.3 M (9 %)

2.7 M (10 %)

1.6 M (8 %)

2.2 ± 0.5

Total unique reads

22.4 M

22.8 M

33.6 M

26.2 ± 6.3

25.3 M

25.5 M

19.3 M

23.3 ± 3.5

  1. Shown are the number and percentage of sequencing read mapping to the indicated genomic regions. Novel gene and exon regions refer to the reads mapped to previously unannotated regions that are enriched in sequencing reads. The number of processed reads obtained from the mapping of the three biological replicates of RNA sequencing to different regions of Camelina genome (in millions M)
  2. DAF days after flowering; SD standard deviation
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